SMTL ID : 1dy5.1 (1 other biounit)

Deamidated derivative of bovine pancreatic ribonuclease

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.87 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: Q.11, H.12, K.41, V.118, H.119, F.120 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.11, A:F.120 Water bridges: A:K.41, A:K.41, A:K.41, A:H.119 Salt bridges: A:H.12, A:K.41, A:H.119

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 5 residues within 4Å: Chain A: H.12, V.43, N.44, T.45, F.120 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.45, A:T.45 Water bridges: A:T.45 Salt bridges: A:H.12

4 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.3: 4 residues within 4Å: Chain A: N.62, V.63, A.64, T.70 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.62 IPA.4: 4 residues within 4Å: Chain A: Q.55, C.58, Y.115, V.116 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Q.55 IPA.5: 3 residues within 4Å: Chain A: E.111, G.112, Y.115 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.111, A:G.112 IPA.6: 6 residues within 4Å: Chain A: S.15, T.17, S.18, H.48, E.49, S.50 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Esposito, L. et al., The Ultrahigh Resolution Crystal Structure of Ribonuclease A Containing an Isoaspartyl Residue: Hydration and Sterochemical Analysis. J.Mol.Biol. (2000)

Release Date

2000-03-28

Peptides

RIBONUCLEASE A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RIBONUCLEASE A

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