SMTL ID : 1dyp.1

1,3-ALPHA-1,4-BETA-D-GALACTOSE-4-SULFATE-3,6-ANHYDRO-D-GALACTOSE 4 GALACTOHYDROLASE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

7 x CD: CADMIUM ION(Non-covalent)

CD.1: 3 residues within 4Å: Chain A: E.215 Ligands: CL.8, CL.9 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.215, A:E.215, H2O.14 CD.2: 3 residues within 4Å: Chain A: E.22, G.53, D.263 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.22, A:G.53, A:D.263, H2O.2, H2O.3 CD.3: 3 residues within 4Å: Chain A: H.157 Ligands: CL.10, CL.11 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.157, H2O.6, H2O.10, H2O.11 CD.4: 3 residues within 4Å: Chain A: E.261 Ligands: CL.12, CL.13 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.261, A:E.261, H2O.16 CD.5: 2 residues within 4Å: Chain A: S.259 Ligands: CL.14 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.259, A:S.259, H2O.16 CD.6: 2 residues within 4Å: Chain A: R.103, D.263 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.263, H2O.2, H2O.16 CD.7: 1 residues within 4Å: Chain A: E.46 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.46, A:E.46

7 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 2 residues within 4Å: Chain A: E.215 Ligands: CD.1 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: K.203, E.215 Ligands: CD.1 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain A: H.157, P.171 Ligands: CD.3, CL.11 Ligand excluded by PLIP CL.11: 5 residues within 4Å: Chain A: H.157, R.170, W.240 Ligands: CD.3, CL.10 Ligand excluded by PLIP CL.12: 5 residues within 4Å: Chain A: K.105, F.192, E.261 Ligands: CD.4, CL.13 Ligand excluded by PLIP CL.13: 2 residues within 4Å: Ligands: CD.4, CL.12 Ligand excluded by PLIP CL.14: 5 residues within 4Å: Chain A: A.107, S.108, T.258, S.259 Ligands: CD.5 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Michel, G. et al., The Kappa-Carrageenase of P. Carrageenovora Features a Tunnel-Shaped Active Site: A Novel Insight in the Evolution of Clan-B Glycoside Hydrolases. Structure (2001)

Release Date

2001-01-16

Peptides

KAPPA-CARRAGEENASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

KAPPA-CARRAGEENASE