SMTL ID : 1e0s.1

small G protein Arf6-GDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 16 residues within 4Å: Chain A: L.20, D.21, A.22, A.23, G.24, K.25, T.26, T.27, N.121, K.122, D.124, L.125, C.154, A.155, T.156 Ligands: NH4.3 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:A.22, A:A.23, A:G.24, A:K.25, A:T.26, A:T.27, A:T.27, A:N.121, A:K.122, A:K.122, A:A.155, A:T.156 Water bridges: A:T.26, A:T.26, A:D.62 Salt bridges: A:K.25, A:D.124

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.2: 3 residues within 4Å: Chain A: Q.123, C.154, D.159 No protein-ligand interaction detected (PLIP)

1 x NH4: AMMONIUM ION(Non-functional Binders)

NH4.3: 3 residues within 4Å: Chain A: T.26, D.62 Ligands: GDP.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.62 Water bridges: A:T.26, A:T.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Menetrey, J. et al., Structure of Arf6-Gdp Suggests a Basis for Guanine Nucleotide Exchange Factors Specificity. Nat.Struct.Biol. (2000)

Release Date

2000-04-18

Peptides

ADP-ribosylation factor 6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ADP-ribosylation factor 6