SMTL ID : 1e19.1

Structure of the carbamate kinase-like carbamoyl phosphate synthetase from the hyperthermophilic archaeon Pyrococcus furiosus bound to ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain A: G.10, G.11, T.235, D.236, V.237, G.239, A.240, A.241, Y.244, W.251, H.268, F.269, K.270, S.273, M.274, K.277 Ligands: MG.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:G.11, A:T.235, A:D.236, A:A.241, A:Y.244, A:Y.244, A:H.268, A:K.270 Water bridges: A:N.12, A:K.215, A:L.234, A:K.277, A:K.277 Salt bridges: A:K.215, A:K.277, A:K.277 pi-Stacking: A:Y.244, A:Y.244 ADP.3: 17 residues within 4Å: Chain B: G.10, G.11, T.235, D.236, V.237, G.239, A.240, A.241, Y.244, W.251, H.268, F.269, K.270, S.273, M.274, K.277 Ligands: MG.4 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:G.11, B:T.235, B:D.236, B:A.241, B:A.241, B:Y.244, B:K.270 Water bridges: B:N.12, B:K.215, B:L.234, B:Y.244, B:Y.244, B:Y.244, B:K.277, B:K.277 Salt bridges: B:K.215, B:K.277, B:K.277 pi-Stacking: B:Y.244, B:Y.244

2 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 1 residues within 4Å: Ligands: ADP.1 No protein-ligand interaction detected (PLIP) MG.4: 1 residues within 4Å: Ligands: ADP.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramon-Maiques, S. et al., The 1.5-A Resolution Crystal Structure of the Carbamate Kinase-Like Carbamoyl Phosphate Synthetase from the Hyperthermophilic Archaeon Pyrococcus Furiosus, Bound to Adp, Confirms that This Thermoestable Enzyme is a Carbamate Kinase, and Provides Insights Into Substrate Binding and Stability in Carbamate Kinases. J.Mol.Biol. (2000)

Release Date

2000-07-04

Peptides

CARBAMATE KINASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CARBAMATE KINASE