SMTL ID : 1e2n.1 (1 other biounit)

HPT + HMTT

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: H.13, G.14, T.19, T.20, R.118, R.175, R.177 Ligands: RCA.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.14, A:T.20, A:T.20, A:T.20, A:R.118, A:R.175 Water bridges: A:M.15, A:M.15 Salt bridges: A:R.177 SO4.3: 6 residues within 4Å: Chain B: H.13, G.14, M.15, G.16, K.17, T.18 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:G.14, B:M.15, B:G.16, B:K.17, B:T.18 Water bridges: B:P.12, B:P.12, B:K.17, B:K.17, B:K.17, B:T.18, B:T.19 SO4.5: 8 residues within 4Å: Chain C: H.13, G.14, T.19, T.20, R.118, R.175, R.177 Ligands: RCA.6 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:G.14, C:T.20, C:T.20, C:R.118, C:R.175 Water bridges: C:M.15, C:M.15, C:T.20 Salt bridges: C:R.177 SO4.7: 6 residues within 4Å: Chain D: H.13, G.14, M.15, G.16, K.17, T.18 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:G.14, D:M.15, D:G.16, D:K.17, D:T.18, D:T.18 Water bridges: D:P.12, D:P.12, D:K.17, D:K.17, D:K.17, D:T.19

4 x RCA: 6-{[4-(HYDROXYMETHYL)-5-METHYL-2,6-DIOXOHEXAHYDROPYRIMIDIN-5-YL]METHYL}-5-METHYLPYRIMIDINE-2,4(1H,3H)-DIONE(Non-covalent)

RCA.2: 16 residues within 4Å: Chain A: H.13, E.38, M.40, W.43, I.52, I.55, Y.56, Q.80, M.83, Y.87, R.118, A.122, A.123, Y.127, R.177 Ligands: SO4.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.43, A:I.52, A:Y.127 Hydrogen bonds: A:E.38, A:Q.80, A:Q.80, A:R.118, A:R.177 Water bridges: A:Y.56, A:R.131, A:R.131 pi-Stacking: A:Y.127 RCA.4: 13 residues within 4Å: Chain B: H.13, E.38, M.40, W.43, I.52, I.55, Y.56, Q.80, M.83, Y.87, R.118, A.123, Y.127 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:W.43, B:I.52, B:Y.127, B:Y.127 Hydrogen bonds: B:E.38, B:E.38, B:Y.56, B:Q.80, B:Q.80, B:R.118 Water bridges: B:K.17 pi-Stacking: B:Y.127 RCA.6: 16 residues within 4Å: Chain C: H.13, E.38, M.40, W.43, I.52, I.55, Y.56, Q.80, M.83, Y.87, R.118, A.122, A.123, Y.127, R.177 Ligands: SO4.5 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:W.43, C:I.52, C:Y.127 Hydrogen bonds: C:E.38, C:Y.56, C:Q.80, C:Q.80, C:R.118, C:R.177 Water bridges: C:E.38, C:Y.56, C:R.131, C:R.131 pi-Stacking: C:Y.127 RCA.8: 13 residues within 4Å: Chain D: H.13, E.38, M.40, W.43, I.52, I.55, Y.56, Q.80, M.83, Y.87, R.118, A.123, Y.127 10 PLIP interactions: 10 interactions with chain D Hydrophobic interactions: D:W.43, D:I.52, D:Y.127, D:Y.127 Hydrogen bonds: D:E.38, D:Q.80, D:Q.80, D:R.118 Water bridges: D:K.17 pi-Stacking: D:Y.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wurth, C. et al., The Effect of Substrate Binding on the Conformation and Structural Stability of Herpes Simplex Virus Type 1 Thymidine Kinase. Protein Sci. (2001)

Release Date

2001-03-31

Peptides

THYMIDINE KINASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

THYMIDINE KINASE

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