SMTL ID : 1e3i.1

Mouse class II alcohol dehydrogenase complex with NADH and inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

homo-dimer

Ligands

2 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 27 residues within 4Å: Chain A: P.47, T.48, F.93, C.178, S.182, G.203, L.204, G.205, C.206, V.207, I.226, D.227, I.228, N.229, K.232, C.272, A.273, T.275, T.278, V.296, G.297, A.298, T.319, F.320, F.321, R.371 Ligands: CXF.2 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:G.203, A:L.204, A:G.205, A:V.207, A:I.228, A:K.232, A:A.273, A:T.275, A:T.275, A:A.298, A:T.319, A:F.321 Water bridges: A:C.206, A:G.208, A:K.232, A:K.232, A:R.371, A:R.371, A:R.371 Salt bridges: A:R.371 NAI.5: 28 residues within 4Å: Chain B: P.47, T.48, F.93, C.178, S.182, G.203, L.204, G.205, C.206, V.207, I.226, D.227, I.228, N.229, K.232, C.272, A.273, T.275, T.278, V.296, G.297, A.298, K.299, T.319, F.320, F.321, R.371 Ligands: CXF.6 25 PLIP interactions: 25 interactions with chain B Hydrogen bonds: B:T.48, B:G.203, B:L.204, B:G.205, B:V.207, B:I.228, B:K.232, B:A.273, B:T.275, B:V.296, B:A.298, B:F.321 Water bridges: B:C.206, B:C.206, B:G.208, B:N.229, B:K.232, B:K.232, B:K.232, B:K.299, B:K.299, B:R.371, B:R.371 Salt bridges: B:K.232, B:R.371

2 x CXF: CYCLOHEXYLFORMAMIDE(Non-covalent)

CXF.2: 9 residues within 4Å: Chain A: C.46, T.48, H.67, F.93, M.145, C.178 Chain B: I.311 Ligands: NAI.1, ZN.3 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:F.93, B:I.311 Hydrogen bonds: A:T.48 CXF.6: 8 residues within 4Å: Chain B: C.46, T.48, H.67, F.93, M.145, C.178 Ligands: NAI.5, ZN.7 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:T.48, B:F.93

4 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.46, H.67, C.178 Ligands: CXF.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.46, A:H.67, A:C.178 ZN.4: 6 residues within 4Å: Chain A: C.97, K.98, C.100, C.103, C.111, G.112 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.97, A:C.100, A:C.103, A:C.111 ZN.7: 4 residues within 4Å: Chain B: C.46, H.67, C.178 Ligands: CXF.6 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.46, B:H.67, B:C.178 ZN.8: 6 residues within 4Å: Chain B: C.97, K.98, C.100, C.103, C.111, G.112 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.97, B:C.100, B:C.103, B:C.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Svensson, S. et al., Crystal Structure of Mouse Class II Alcohol Dehydrogenase Reveal Determinants of Substrate Specificity and Catalytic Efficiency. J.Mol.Biol. (2000)

Release Date

2000-09-12

Peptides

ALCOHOL DEHYDROGENASE, CLASS II: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ALCOHOL DEHYDROGENASE, CLASS II

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