SMTL ID : 1e3p.1

tungstate derivative of Streptomyces antibioticus PNPase/GPSI enzyme

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-trimer

Ligands

30 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: F.101, R.103 Chain C: Q.405 Ligand excluded by PLIP SO4.2: 3 residues within 4Å: Chain A: I.586, D.587, T.588 Ligand excluded by PLIP SO4.3: 3 residues within 4Å: Chain A: K.438, R.439, R.440 Ligand excluded by PLIP SO4.4: 2 residues within 4Å: Chain A: G.432, R.433 Ligand excluded by PLIP SO4.5: 4 residues within 4Å: Chain A: S.71, K.72, N.73, K.75 Ligand excluded by PLIP SO4.6: 6 residues within 4Å: Chain A: F.80, F.81, K.129, G.130, L.131, R.132 Ligand excluded by PLIP SO4.7: 6 residues within 4Å: Chain A: R.177, D.200, V.202, E.219, A.220, E.221 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain A: E.224, R.414, R.416, R.459 Ligand excluded by PLIP SO4.9: 7 residues within 4Å: Chain A: D.111, H.148, L.149, Y.150, H.191, L.409, S.410 Ligand excluded by PLIP SO4.10: 4 residues within 4Å: Chain A: R.377, N.595 Chain B: D.61, N.145 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain A: Q.405 Chain B: F.101, R.103 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain B: I.586, D.587, T.588 Ligand excluded by PLIP SO4.14: 3 residues within 4Å: Chain B: K.438, R.439, R.440 Ligand excluded by PLIP SO4.15: 2 residues within 4Å: Chain B: G.432, R.433 Ligand excluded by PLIP SO4.16: 4 residues within 4Å: Chain B: S.71, K.72, N.73, K.75 Ligand excluded by PLIP SO4.17: 6 residues within 4Å: Chain B: F.80, F.81, K.129, G.130, L.131, R.132 Ligand excluded by PLIP SO4.18: 6 residues within 4Å: Chain B: R.177, D.200, V.202, E.219, A.220, E.221 Ligand excluded by PLIP SO4.19: 4 residues within 4Å: Chain B: E.224, R.414, R.416, R.459 Ligand excluded by PLIP SO4.20: 7 residues within 4Å: Chain B: D.111, H.148, L.149, Y.150, H.191, L.409, S.410 Ligand excluded by PLIP SO4.21: 4 residues within 4Å: Chain B: R.377, N.595 Chain C: D.61, N.145 Ligand excluded by PLIP SO4.23: 3 residues within 4Å: Chain B: Q.405 Chain C: F.101, R.103 Ligand excluded by PLIP SO4.24: 3 residues within 4Å: Chain C: I.586, D.587, T.588 Ligand excluded by PLIP SO4.25: 3 residues within 4Å: Chain C: K.438, R.439, R.440 Ligand excluded by PLIP SO4.26: 2 residues within 4Å: Chain C: G.432, R.433 Ligand excluded by PLIP SO4.27: 4 residues within 4Å: Chain C: S.71, K.72, N.73, K.75 Ligand excluded by PLIP SO4.28: 6 residues within 4Å: Chain C: F.80, F.81, K.129, G.130, L.131, R.132 Ligand excluded by PLIP SO4.29: 6 residues within 4Å: Chain C: R.177, D.200, V.202, E.219, A.220, E.221 Ligand excluded by PLIP SO4.30: 4 residues within 4Å: Chain C: E.224, R.414, R.416, R.459 Ligand excluded by PLIP SO4.31: 7 residues within 4Å: Chain C: D.111, H.148, L.149, Y.150, H.191, L.409, S.410 Ligand excluded by PLIP SO4.32: 4 residues within 4Å: Chain A: D.61, N.145 Chain C: R.377, N.595 Ligand excluded by PLIP

3 x WO4: TUNGSTATE(VI)ION(Non-covalent)

WO4.11: 5 residues within 4Å: Chain A: H.444, S.478, T.479, S.480, K.539 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.479, A:S.480, A:S.480 Water bridges: A:H.444 WO4.22: 5 residues within 4Å: Chain B: H.444, S.478, T.479, S.480, K.539 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.479, B:S.480, B:S.480 Water bridges: B:H.444 WO4.33: 5 residues within 4Å: Chain C: H.444, S.478, T.479, S.480, K.539 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:T.479, C:S.480, C:S.480 Water bridges: C:H.444

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Symmons, M.F. et al., A Duplicated Fold is the Structural Basis for Polynucleotide Phosphorylase Catalytic Activity, Processivity, and Regulation. Structure (2000)

Release Date

2000-11-03

Peptides

Polyribonucleotide nucleotidyltransferase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Polyribonucleotide nucleotidyltransferase

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