SMTL ID : 1e5h.1

DELTA-R307A DEACETOXYCEPHALOSPORIN C SYNTHASE COMPLEXED WITH SUCCINATE AND CARBON DIOXIDE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

homo-trimer

Ligands

3 x FE2: FE (II) ION(Non-covalent)

FE2.1: 5 residues within 4Å: Chain A: H.183, D.185, H.243 Ligands: SIN.2, CO2.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.183, A:D.185, A:D.185, A:H.243, H2O.3 FE2.4: 5 residues within 4Å: Chain B: H.183, D.185, H.243 Ligands: SIN.5, CO2.6 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.183, B:D.185, B:D.185, B:H.243, H2O.8 FE2.7: 5 residues within 4Å: Chain C: H.183, D.185, H.243 Ligands: SIN.8, CO2.9 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.183, C:D.185, C:D.185, C:H.243, H2O.12

3 x SIN: SUCCINIC ACID(Non-covalent)

SIN.2: 9 residues within 4Å: Chain A: R.160, R.162, H.183, I.192, F.225, H.243, V.262 Ligands: FE2.1, CO2.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.262 Salt bridges: A:R.160, A:R.162, A:H.183, A:H.243 SIN.5: 9 residues within 4Å: Chain B: R.160, R.162, H.183, I.192, F.225, H.243, V.262 Ligands: FE2.4, CO2.6 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:V.262 Salt bridges: B:R.160, B:R.162, B:H.183, B:H.243 SIN.8: 9 residues within 4Å: Chain C: R.160, R.162, H.183, I.192, F.225, H.243, V.262 Ligands: FE2.7, CO2.9 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:V.262 Salt bridges: C:R.160, C:R.162, C:H.183, C:H.243

3 x CO2: CARBON DIOXIDE(Non-covalent)

CO2.3: 7 residues within 4Å: Chain A: R.160, H.183, D.185, F.264, I.305 Ligands: FE2.1, SIN.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.160, A:R.160 CO2.6: 7 residues within 4Å: Chain B: R.160, H.183, D.185, F.264, I.305 Ligands: FE2.4, SIN.5 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.160, B:R.160 CO2.9: 7 residues within 4Å: Chain C: R.160, H.183, D.185, F.264, I.305 Ligands: FE2.7, SIN.8 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.160, C:R.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, H.J. et al., Kinetic and Crystallographic Studies on Deacetoxycephalosporin C Synthase (Daocs). J.Mol.Biol. (2001)

Release Date

2001-07-26

Peptides

DEACETOXYCEPHALOSPORIN C SYNTHASE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

DEACETOXYCEPHALOSPORIN C SYNTHASE