Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 1e5v.2
(1 other biounit)
OXIDIZED DMSO REDUCTASE EXPOSED TO HEPES BUFFER
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.40 Å
Oligo State
monomer
Ligands
2 x
PGD
:
2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
(Non-covalent)
PGD.1:
33 residues within 4Å:
Chain A:
Y.156
,
G.157
,
W.158
,
K.159
,
S.160
,
C.167
,
Y.188
,
S.189
,
R.368
,
G.474
,
G.475
,
N.476
,
H.480
,
Q.482
,
H.500
,
D.501
,
F.502
,
T.505
,
A.517
,
R.523
,
D.553
,
A.683
,
H.685
,
L.690
,
H.691
,
S.692
,
Q.693
,
E.757
,
N.779
,
G.796
,
Q.797
Ligands:
PGD.2
,
2MO.3
27
PLIP interactions
:
27 interactions with chain A
Hydrogen bonds:
A:W.158
,
A:R.368
,
A:G.474
,
A:N.476
,
A:H.480
,
A:Q.482
,
A:H.500
,
A:R.523
,
A:R.523
,
A:L.690
,
A:S.692
,
A:S.692
,
A:Q.693
,
A:Q.693
,
A:N.779
,
A:N.779
,
A:Q.797
Water bridges:
A:S.160
,
A:C.167
,
A:D.501
,
A:Q.693
Salt bridges:
A:H.480
,
A:D.501
,
A:D.553
,
A:H.691
,
A:H.691
pi-Stacking:
A:F.502
PGD.2:
34 residues within 4Å:
Chain A:
M.83
,
W.158
,
S.189
,
W.226
,
A.227
,
D.229
,
K.232
,
T.233
,
Q.235
,
I.236
,
I.262
,
D.263
,
P.264
,
V.265
,
T.267
,
P.282
,
Q.283
,
D.285
,
G.363
,
W.364
,
S.365
,
R.368
,
M.369
,
H.401
,
S.684
,
H.685
,
P.686
,
F.687
,
R.689
,
L.690
,
H.691
,
Q.797
Ligands:
PGD.1
,
2MO.3
22
PLIP interactions
:
22 interactions with chain A
Hydrogen bonds:
A:D.229
,
A:K.232
,
A:T.233
,
A:Q.235
,
A:I.262
,
A:Q.283
,
A:W.364
,
A:S.365
,
A:S.365
,
A:R.368
,
A:H.685
,
A:H.691
,
A:Q.797
Water bridges:
A:K.232
,
A:S.684
,
A:S.684
Salt bridges:
A:K.232
,
A:D.285
,
A:R.368
,
A:H.401
,
A:H.685
,
A:H.685
1 x
2MO
:
MOLYBDENUM (IV)OXIDE
(Non-covalent)
2MO.3:
6 residues within 4Å:
Chain A:
Y.156
,
W.158
,
Y.188
,
S.189
Ligands:
PGD.1
,
PGD.2
3
PLIP interactions
:
3 interactions with chain A
Hydrogen bonds:
A:Y.156
,
A:Y.188
,
A:S.189
1 x
SO4
:
SULFATE ION
(Non-functional Binders)
SO4.4:
4 residues within 4Å:
Chain A:
K.159
,
R.163
,
N.166
,
W.238
4
PLIP interactions
:
4 interactions with chain A
Hydrogen bonds:
A:N.166
Water bridges:
A:T.169
Salt bridges:
A:K.159
,
A:R.163
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Bray, R.C. et al., Reversible Dissociation of Thiolate Ligands from Molybdenum in an Enzyme of the Dimethyl Sulfoxide Reductase Family. Biochemistry (2000)
Release Date
2000-08-25
Peptides
Dimethyl sulfoxide/trimethylamine N-oxide reductase:
A
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
C
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
Dimethyl sulfoxide/trimethylamine N-oxide reductase
Related Entries With Identical Sequence
1dmr.1
|
1e5v.1
|
1h5n.1
|
1h5n.2
|
2dmr.1
|
3dmr.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme