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SMTL ID : 1e6w.1
Rat brain 3-hydroxyacyl-CoA dehydrogenase binary complex with NADH and estradiol
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.70 Å
Oligo State
homo-tetramer
Ligands
4 x
NAD
:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
(Non-covalent)
NAD.1:
27 residues within 4Å:
Chain A:
G.16
,
S.19
,
G.20
,
L.21
,
D.40
,
V.41
,
A.62
,
N.63
,
V.64
,
C.90
,
A.91
,
G.92
,
I.93
,
V.119
,
T.152
,
A.153
,
S.154
,
Y.167
,
K.171
,
P.197
,
G.198
,
L.199
,
F.200
,
T.202
,
P.203
,
L.204
,
L.205
12
PLIP interactions
:
12 interactions with chain A
Hydrophobic interactions:
A:P.197
Hydrogen bonds:
A:S.19
,
A:L.21
,
A:V.41
,
A:N.63
,
A:V.64
,
A:C.90
,
A:G.92
,
A:K.171
,
A:F.200
,
A:F.200
Water bridges:
A:G.22
NAD.2:
27 residues within 4Å:
Chain B:
G.16
,
S.19
,
G.20
,
L.21
,
D.40
,
V.41
,
A.62
,
N.63
,
V.64
,
C.90
,
A.91
,
G.92
,
I.93
,
V.119
,
T.152
,
A.153
,
S.154
,
Y.167
,
K.171
,
P.197
,
G.198
,
L.199
,
F.200
,
T.202
,
P.203
,
L.204
,
L.205
16
PLIP interactions
:
16 interactions with chain B
Hydrophobic interactions:
B:P.197
Hydrogen bonds:
B:G.16
,
B:S.19
,
B:L.21
,
B:V.41
,
B:N.63
,
B:V.64
,
B:C.90
,
B:G.92
,
B:Y.167
,
B:K.171
,
B:F.200
,
B:F.200
,
B:T.202
,
B:T.202
Water bridges:
B:G.22
NAD.3:
28 residues within 4Å:
Chain C:
G.16
,
A.18
,
S.19
,
G.20
,
L.21
,
D.40
,
V.41
,
A.62
,
N.63
,
V.64
,
C.90
,
A.91
,
G.92
,
I.93
,
V.119
,
T.152
,
A.153
,
S.154
,
Y.167
,
K.171
,
P.197
,
G.198
,
L.199
,
F.200
,
T.202
,
P.203
,
L.204
Ligands:
EST.4
15
PLIP interactions
:
15 interactions with chain C
Hydrophobic interactions:
C:P.197
,
C:L.204
Hydrogen bonds:
C:G.16
,
C:S.19
,
C:L.21
,
C:V.41
,
C:N.63
,
C:V.64
,
C:A.91
,
C:G.92
,
C:K.171
,
C:F.200
,
C:F.200
,
C:T.202
Water bridges:
C:G.22
NAD.5:
26 residues within 4Å:
Chain D:
G.16
,
S.19
,
G.20
,
L.21
,
D.40
,
V.41
,
A.62
,
N.63
,
V.64
,
C.90
,
A.91
,
G.92
,
I.93
,
V.119
,
T.152
,
A.153
,
S.154
,
Y.167
,
K.171
,
P.197
,
G.198
,
L.199
,
F.200
,
T.202
,
P.203
,
L.204
14
PLIP interactions
:
14 interactions with chain D
Hydrophobic interactions:
D:P.197
Hydrogen bonds:
D:G.16
,
D:S.19
,
D:L.21
,
D:V.41
,
D:N.63
,
D:V.64
,
D:C.90
,
D:G.92
,
D:K.171
,
D:F.200
,
D:F.200
,
D:L.204
Water bridges:
D:G.22
1 x
EST
:
ESTRADIOL
(Non-covalent)
EST.4:
5 residues within 4Å:
Chain C:
A.94
,
Q.164
,
Y.167
,
L.205
Ligands:
NAD.3
2
PLIP interactions
:
2 interactions with chain C
Hydrophobic interactions:
C:A.94
Hydrogen bonds:
C:Y.167
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Powell, A.J. et al., Recognition of Structurally Diverse Substrates by Type II 3-Hydroxyacyl-Coa Dehydrogenase (Hadh II) Amyloid-Beta Binding Alcohol Dehydrogenase (Abad). J.Mol.Biol. (2000)
Release Date
2001-05-25
Peptides
SHORT CHAIN 3-HYDROXYACYL-COA DEHYDROGENASE:
A
B
C
D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
Export Alignment
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Clustal Format
PNG Image
Secondary Structure
None
DSSP
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Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
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Charged
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Ser/Thr
Cysteine
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SHORT CHAIN 3-HYDROXYACYL-COA DEHYDROGENASE
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
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