SMTL ID : 1e7d.1

Endonuclease VII (ENDOVII) Ffrom Phage T4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.23, C.26, C.58, C.61 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.23, A:C.26, A:C.58, A:C.61 ZN.4: 4 residues within 4Å: Chain B: C.23, C.26, C.58, C.61 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.23, B:C.26, B:C.58, B:C.61

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain A: D.40, N.62, E.65 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.40, H2O.1 CA.5: 4 residues within 4Å: Chain B: H.38, D.40, N.62, E.65 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.40, B:E.65

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: Y.8, K.12, N.37, H.38, L.39 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain A: K.71 Chain B: H.70, K.71, R.74 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain B: Y.8, K.12, H.38, L.39 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Raaijmakers, H.C.A. et al., Conformational Flexibility in T4 Endonuclease Vii Revealed by Crystallography: Implications for Substrate Binding and Cleavage. J.Mol.Biol. (2001)

Release Date

2001-05-04

Peptides

RECOMBINATION ENDONUCLEASE VII: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

RECOMBINATION ENDONUCLEASE VII

Related Entries With Identical Sequence