SMTL ID : 1e8c.1 (1 other biounit)

Structure of MurE the UDP-N-acetylmuramyl tripeptide synthetase from E. coli

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

1 x UAG: URIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE-D-GLUTAMATE(Non-covalent)

UAG.2: 22 residues within 4Å: Chain A: L.26, D.27, S.28, R.29, F.37, V.40, G.42, H.43, Q.44, A.45, G.47, Y.50, N.156, T.157, T.158, S.160, S.184, H.186, Q.190, R.192, H.210 Ligands: API.3 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:D.27, A:S.28, A:S.28, A:H.43, A:Q.44, A:A.45, A:N.156, A:N.156, A:N.156, A:T.157, A:T.158, A:S.184, A:S.184, A:Q.190, A:R.192, A:R.192 Salt bridges: A:H.43, A:R.192 pi-Stacking: A:Y.50

1 x API: 2,6-DIAMINOPIMELIC ACID(Non-covalent)

API.3: 11 residues within 4Å: Chain A: H.210, Y.357, H.359, G.386, R.389, D.413, N.414, R.416, G.464, E.468 Ligands: UAG.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.386, A:D.413, A:N.414 Water bridges: A:H.359, A:K.393, A:R.416 Salt bridges: A:H.210, A:R.389, A:R.416, A:R.416

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gordon, E.J. et al., Crystal Structure of Udp-N-Acetylmuramoyl-L-Alanyl-D-Glutamate: Meso-Diaminopimelate Ligase from Escherichia Coli. J.Biol.Chem. (2001)

Release Date

2001-09-13

Peptides

UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE

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