SMTL ID : 1e8u.1

Structure of the multifunctional paramyxovirus hemagglutinin-neuraminidase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.138, S.141, V.143, V.173 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.138, A:D.138, A:S.141, A:V.143, A:V.173 CA.6: 4 residues within 4Å: Chain B: D.138, S.141, V.143, V.173 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.138, B:D.138, B:S.141, B:V.143, B:V.173

2 x SLB: N-acetyl-beta-neuraminic acid(Non-covalent)

SLB.2: 12 residues within 4Å: Chain A: I.52, K.113, S.114, E.135, Y.176, Y.194, R.240, F.241, E.278, R.293, R.375, Y.403 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.176 Hydrogen bonds: A:K.113, A:Y.194, A:Y.194, A:R.240, A:E.278, A:R.293, A:Y.403 Water bridges: A:Y.139, A:Y.139, A:Y.194, A:R.375 Salt bridges: A:R.293, A:R.375 SLB.7: 13 residues within 4Å: Chain B: I.52, D.75, K.113, S.114, E.135, Y.176, Y.194, R.240, E.278, R.293, V.343, R.375, Y.403 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:Y.176 Hydrogen bonds: B:Y.194, B:R.240, B:R.293, B:Y.403, B:Y.403 Water bridges: B:S.114, B:Y.194, B:S.295, B:S.295, B:R.375 Salt bridges: B:R.293, B:R.375

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)(Non-functional Binders)

NAG.3: 2 residues within 4Å: Chain A: Y.217, N.218 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.217 Hydrogen bonds: A:Y.217, A:Y.217 NAG.4: 4 residues within 4Å: Chain A: Y.356, N.358, T.360 Ligands: NAG.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.360 NAG.5: 1 residues within 4Å: Ligands: NAG.4 No protein-ligand interaction detected (PLIP) NAG.8: 4 residues within 4Å: Chain B: Y.356, N.358, T.360 Ligands: NAG.9 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.360, B:T.360 NAG.9: 1 residues within 4Å: Ligands: NAG.8 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crennell, S. et al., Crystal Structure of the Multifunctional Paramyxovirus Hemagglutinin-Neuraminidase. Nat.Struct.Biol. (2000)

Release Date

2001-04-03

Peptides

HEMAGGLUTININ-NEURAMINIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HEMAGGLUTININ-NEURAMINIDASE

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