SMTL ID : 1e9v.1

XENON BOUND IN HYDROPHOBIC CHANNEL OF HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO VULGARIS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

1 x FSO: IRON/SULFUR/OXYGEN HYBRID CLUSTER(Non-covalent)

FSO.1: 13 residues within 4Å: Chain A: H.244, E.268, W.292, N.311, C.312, G.405, C.406, G.433, C.434, C.459, Y.493, E.494, K.496 9 PLIP interactions: 9 interactions with chain A, Hydrogen bonds: A:C.434, A:K.496 Salt bridges: A:E.494 Metal complexes: A:H.244, A:E.268, A:C.312, A:C.434, A:C.459, A:E.494

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.2: 12 residues within 4Å: Chain A: M.1, C.3, F.4, Q.5, C.6, T.9, C.15, G.19, M.20, C.21, K.23, T.71 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.3, A:C.6, A:C.15, A:C.21

13 x XE: XENON(Non-covalent)

XE.3: 1 residues within 4Å: Chain A: L.472 No protein-ligand interaction detected (PLIP) XE.4: 1 residues within 4Å: Chain A: S.462 No protein-ligand interaction detected (PLIP) XE.5: 2 residues within 4Å: Chain A: L.522, I.536 No protein-ligand interaction detected (PLIP) XE.6: 3 residues within 4Å: Chain A: F.376, L.384, V.388 No protein-ligand interaction detected (PLIP) XE.7: 1 residues within 4Å: Chain A: L.530 No protein-ligand interaction detected (PLIP) XE.8: 1 residues within 4Å: Chain A: L.501 No protein-ligand interaction detected (PLIP) XE.9: 3 residues within 4Å: Chain A: V.381, F.400, I.468 No protein-ligand interaction detected (PLIP) XE.10: 4 residues within 4Å: Chain A: L.430, L.465, I.468, A.469 No protein-ligand interaction detected (PLIP) XE.11: 3 residues within 4Å: Chain A: V.192, N.525, V.526 No protein-ligand interaction detected (PLIP) XE.12: 4 residues within 4Å: Chain A: G.405, I.490, A.497, V.500 No protein-ligand interaction detected (PLIP) XE.13: 3 residues within 4Å: Chain A: A.466, I.481, V.509 No protein-ligand interaction detected (PLIP) XE.14: 4 residues within 4Å: Chain A: W.492, V.498, L.501, L.514 No protein-ligand interaction detected (PLIP) XE.15: 4 residues within 4Å: Chain A: V.402, A.404, S.462, L.504 No protein-ligand interaction detected (PLIP)

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.16: 5 residues within 4Å: Chain A: D.76, Y.334, E.335, G.336, A.337 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.336, A:A.337, A:A.337 Water bridges: A:D.76, A:D.76, A:Y.334, A:H.339

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.17: 3 residues within 4Å: Chain A: E.81, S.124, T.125 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.81

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.18: 2 residues within 4Å: Chain A: E.181, K.201 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.201, A:K.201

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.19: 6 residues within 4Å: Chain A: T.227, V.229, N.273, K.279, F.284, V.285 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.273, A:K.279, A:F.284 Water bridges: A:F.284

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cooper, S.J. et al., Ferricyanide Soaked Hybrid Cluster Protein at 1.2A and Xenon Mapping of the Hydrophobic Cavity at 1.8A. To be Published

Release Date

2001-10-25

Peptides

HYDROXYLAMINE REDUCTASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HYDROXYLAMINE REDUCTASE

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