SMTL ID : 1e9z.1

Crystal structure of Helicobacter pylori urease

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-12-12-mer

Ligands

24 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 8 residues within 4Å: Chain B: H.136, K.219, H.221, H.248, H.274, G.279, D.362 Ligands: NI.2 Ligand excluded by PLIP NI.2: 5 residues within 4Å: Chain B: H.136, H.138, K.219, D.362 Ligands: NI.1 Ligand excluded by PLIP NI.3: 8 residues within 4Å: Chain D: H.136, K.219, H.221, H.248, H.274, G.279, D.362 Ligands: NI.4 Ligand excluded by PLIP NI.4: 5 residues within 4Å: Chain D: H.136, H.138, K.219, D.362 Ligands: NI.3 Ligand excluded by PLIP NI.5: 8 residues within 4Å: Chain F: H.136, K.219, H.221, H.248, H.274, G.279, D.362 Ligands: NI.6 Ligand excluded by PLIP NI.6: 5 residues within 4Å: Chain F: H.136, H.138, K.219, D.362 Ligands: NI.5 Ligand excluded by PLIP NI.7: 8 residues within 4Å: Chain H: H.136, K.219, H.221, H.248, H.274, G.279, D.362 Ligands: NI.8 Ligand excluded by PLIP NI.8: 5 residues within 4Å: Chain H: H.136, H.138, K.219, D.362 Ligands: NI.7 Ligand excluded by PLIP NI.9: 8 residues within 4Å: Chain J: H.136, K.219, H.221, H.248, H.274, G.279, D.362 Ligands: NI.10 Ligand excluded by PLIP NI.10: 5 residues within 4Å: Chain J: H.136, H.138, K.219, D.362 Ligands: NI.9 Ligand excluded by PLIP NI.11: 8 residues within 4Å: Chain L: H.136, K.219, H.221, H.248, H.274, G.279, D.362 Ligands: NI.12 Ligand excluded by PLIP NI.12: 5 residues within 4Å: Chain L: H.136, H.138, K.219, D.362 Ligands: NI.11 Ligand excluded by PLIP NI.13: 8 residues within 4Å: Chain N: H.136, K.219, H.221, H.248, H.274, G.279, D.362 Ligands: NI.14 Ligand excluded by PLIP NI.14: 5 residues within 4Å: Chain N: H.136, H.138, K.219, D.362 Ligands: NI.13 Ligand excluded by PLIP NI.15: 8 residues within 4Å: Chain P: H.136, K.219, H.221, H.248, H.274, G.279, D.362 Ligands: NI.16 Ligand excluded by PLIP NI.16: 5 residues within 4Å: Chain P: H.136, H.138, K.219, D.362 Ligands: NI.15 Ligand excluded by PLIP NI.17: 8 residues within 4Å: Chain R: H.136, K.219, H.221, H.248, H.274, G.279, D.362 Ligands: NI.18 Ligand excluded by PLIP NI.18: 5 residues within 4Å: Chain R: H.136, H.138, K.219, D.362 Ligands: NI.17 Ligand excluded by PLIP NI.19: 8 residues within 4Å: Chain T: H.136, K.219, H.221, H.248, H.274, G.279, D.362 Ligands: NI.20 Ligand excluded by PLIP NI.20: 5 residues within 4Å: Chain T: H.136, H.138, K.219, D.362 Ligands: NI.19 Ligand excluded by PLIP NI.21: 8 residues within 4Å: Chain V: H.136, K.219, H.221, H.248, H.274, G.279, D.362 Ligands: NI.22 Ligand excluded by PLIP NI.22: 5 residues within 4Å: Chain V: H.136, H.138, K.219, D.362 Ligands: NI.21 Ligand excluded by PLIP NI.23: 8 residues within 4Å: Chain X: H.136, K.219, H.221, H.248, H.274, G.279, D.362 Ligands: NI.24 Ligand excluded by PLIP NI.24: 5 residues within 4Å: Chain X: H.136, H.138, K.219, D.362 Ligands: NI.23 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ha, N.-C. et al., Supramolecular Assembly and Acid Resistance of Helicobacter Pylori Urease. Nat.Struct.Biol. (2001)

Release Date

2001-11-01

Peptides

UREASE SUBUNIT ALPHA: ACEGIKMOQSUW
UREASE SUBUNIT BETA: BDFHJLNPRTVX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

G
A

I
A

K
A

M
A

O
A

Q
A

S
A

U
A

W
A

B
B

D
B

F
B

H
B

J
B

L
B

N
B

P
B

R
B

T
B

V
B

X
B

UREASE SUBUNIT ALPHA

UREASE SUBUNIT BETA

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