SMTL ID : 1ead.1

ATOMIC STRUCTURE OF THE CUBIC CORE OF THE PYRUVATE DEHYDROGENASE MULTIENZYME COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-24-mer

Ligands

24 x CAO: OXIDIZED COENZYME A(Non-covalent)

CAO.1: 24 residues within 4Å: Chain A: H.216, G.221, A.222 Chain E: R.56, K.69, T.71, V.72, F.111, A.112, V.113, D.114, R.147, S.164, S.165, L.166, G.167, H.168, F.174, P.176, V.188, S.189, K.190, A.191, L.208 19 PLIP interactions: 17 interactions with chain E, 2 interactions with chain A Hydrophobic interactions: E:F.111, E:A.112, E:L.166 Hydrogen bonds: E:T.71, E:D.114, E:R.147, E:S.164, E:S.165, E:I.177, E:S.189, E:A.191, A:A.222 Water bridges: E:R.56, E:D.114, E:S.165, A:G.221 Salt bridges: E:R.56, E:K.69, E:K.69 CAO.2: 24 residues within 4Å: Chain B: H.216, G.221, A.222 Chain G: R.56, K.69, T.71, V.72, F.111, A.112, V.113, D.114, R.147, S.164, S.165, L.166, G.167, H.168, F.174, P.176, V.188, S.189, K.190, A.191, L.208 19 PLIP interactions: 17 interactions with chain G, 2 interactions with chain B Hydrophobic interactions: G:F.111, G:A.112, G:L.166 Hydrogen bonds: G:T.71, G:D.114, G:R.147, G:S.164, G:S.165, G:I.177, G:S.189, G:A.191, B:A.222 Water bridges: G:R.56, G:D.114, G:S.165, B:G.221 Salt bridges: G:R.56, G:K.69, G:K.69 CAO.3: 24 residues within 4Å: Chain C: H.216, G.221, A.222 Chain H: R.56, K.69, T.71, V.72, F.111, A.112, V.113, D.114, R.147, S.164, S.165, L.166, G.167, H.168, F.174, P.176, V.188, S.189, K.190, A.191, L.208 19 PLIP interactions: 16 interactions with chain H, 3 interactions with chain C Hydrophobic interactions: H:F.111, H:A.112, H:L.166 Hydrogen bonds: H:T.71, H:T.71, H:D.114, H:R.147, H:S.164, H:S.165, H:I.177, H:S.189, H:A.191, C:A.222 Water bridges: H:S.165, C:G.221, C:G.221 Salt bridges: H:R.56, H:K.69, H:K.69 CAO.4: 24 residues within 4Å: Chain D: H.216, G.221, A.222 Chain F: R.56, K.69, T.71, V.72, F.111, A.112, V.113, D.114, R.147, S.164, S.165, L.166, G.167, H.168, F.174, P.176, V.188, S.189, K.190, A.191, L.208 19 PLIP interactions: 16 interactions with chain F, 3 interactions with chain D Hydrophobic interactions: F:F.111, F:A.112, F:L.166 Hydrogen bonds: F:T.71, F:T.71, F:D.114, F:R.147, F:S.164, F:S.165, F:I.177, F:S.189, F:A.191, D:A.222 Water bridges: F:S.165, D:G.221, D:G.221 Salt bridges: F:R.56, F:K.69, F:K.69 CAO.5: 24 residues within 4Å: Chain E: H.216, G.221, A.222 Chain I: R.56, K.69, T.71, V.72, F.111, A.112, V.113, D.114, R.147, S.164, S.165, L.166, G.167, H.168, F.174, P.176, V.188, S.189, K.190, A.191, L.208 19 PLIP interactions: 17 interactions with chain I, 2 interactions with chain E Hydrophobic interactions: I:F.111, I:A.112, I:L.166 Hydrogen bonds: I:T.71, I:T.71, I:D.114, I:R.147, I:S.164, I:S.165, I:I.177, I:S.189, I:A.191, E:A.222 Water bridges: I:D.114, I:S.165, E:G.221 Salt bridges: I:R.56, I:K.69, I:K.69 CAO.6: 24 residues within 4Å: Chain F: H.216, G.221, A.222 Chain K: R.56, K.69, T.71, V.72, F.111, A.112, V.113, D.114, R.147, S.164, S.165, L.166, G.167, H.168, F.174, P.176, V.188, S.189, K.190, A.191, L.208 19 PLIP interactions: 16 interactions with chain K, 3 interactions with chain F Hydrophobic interactions: K:F.111, K:A.112, K:L.166 Hydrogen bonds: K:T.71, K:D.114, K:R.147, K:S.164, K:S.165, K:I.177, K:S.189, K:A.191, F:A.222 Water bridges: K:R.56, K:S.165, F:G.221, F:G.221 Salt bridges: K:R.56, K:K.69, K:K.69 CAO.7: 24 residues within 4Å: Chain G: H.216, G.221, A.222 Chain L: R.56, K.69, T.71, V.72, F.111, A.112, V.113, D.114, R.147, S.164, S.165, L.166, G.167, H.168, F.174, P.176, V.188, S.189, K.190, A.191, L.208 19 PLIP interactions: 17 interactions with chain L, 2 interactions with chain G Hydrophobic interactions: L:F.111, L:A.112, L:L.166 Hydrogen bonds: L:T.71, L:T.71, L:D.114, L:R.147, L:S.164, L:S.165, L:I.177, L:S.189, L:A.191, G:A.222 Water bridges: L:D.114, L:S.165, G:G.221 Salt bridges: L:R.56, L:K.69, L:K.69 CAO.8: 24 residues within 4Å: Chain H: H.216, G.221, A.222 Chain J: R.56, K.69, T.71, V.72, F.111, A.112, V.113, D.114, R.147, S.164, S.165, L.166, G.167, H.168, F.174, P.176, V.188, S.189, K.190, A.191, L.208 19 PLIP interactions: 3 interactions with chain H, 16 interactions with chain J Hydrogen bonds: H:A.222, J:T.71, J:D.114, J:R.147, J:S.164, J:S.165, J:I.177, J:S.189, J:A.191 Water bridges: H:G.221, H:G.221, J:R.56, J:S.165 Hydrophobic interactions: J:F.111, J:A.112, J:L.166 Salt bridges: J:R.56, J:K.69, J:K.69 CAO.9: 24 residues within 4Å: Chain A: R.56, K.69, T.71, V.72, F.111, A.112, V.113, D.114, R.147, S.164, S.165, L.166, G.167, H.168, F.174, P.176, V.188, S.189, K.190, A.191, L.208 Chain I: H.216, G.221, A.222 19 PLIP interactions: 17 interactions with chain A, 2 interactions with chain I Hydrophobic interactions: A:F.111, A:A.112, A:L.166 Hydrogen bonds: A:T.71, A:D.114, A:R.147, A:S.164, A:S.165, A:I.177, A:S.189, A:A.191, I:A.222 Water bridges: A:R.56, A:D.114, A:S.165, I:G.221 Salt bridges: A:R.56, A:K.69, A:K.69 CAO.10: 24 residues within 4Å: Chain C: R.56, K.69, T.71, V.72, F.111, A.112, V.113, D.114, R.147, S.164, S.165, L.166, G.167, H.168, F.174, P.176, V.188, S.189, K.190, A.191, L.208 Chain J: H.216, G.221, A.222 19 PLIP interactions: 16 interactions with chain C, 3 interactions with chain J Hydrophobic interactions: C:F.111, C:A.112, C:L.166 Hydrogen bonds: C:T.71, C:T.71, C:D.114, C:R.147, C:S.164, C:S.165, C:I.177, C:S.189, C:A.191, J:A.222 Water bridges: C:S.165, J:G.221, J:G.221 Salt bridges: C:R.56, C:K.69, C:K.69 CAO.11: 24 residues within 4Å: Chain D: R.56, K.69, T.71, V.72, F.111, A.112, V.113, D.114, R.147, S.164, S.165, L.166, G.167, H.168, F.174, P.176, V.188, S.189, K.190, A.191, L.208 Chain K: H.216, G.221, A.222 19 PLIP interactions: 3 interactions with chain K, 16 interactions with chain D Hydrogen bonds: K:A.222, D:T.71, D:T.71, D:D.114, D:R.147, D:S.164, D:S.165, D:I.177, D:S.189, D:A.191 Water bridges: K:G.221, K:G.221, D:S.165 Hydrophobic interactions: D:F.111, D:A.112, D:L.166 Salt bridges: D:R.56, D:K.69, D:K.69 CAO.12: 24 residues within 4Å: Chain B: R.56, K.69, T.71, V.72, F.111, A.112, V.113, D.114, R.147, S.164, S.165, L.166, G.167, H.168, F.174, P.176, V.188, S.189, K.190, A.191, L.208 Chain L: H.216, G.221, A.222 19 PLIP interactions: 17 interactions with chain B, 2 interactions with chain L Hydrophobic interactions: B:F.111, B:A.112, B:L.166 Hydrogen bonds: B:T.71, B:D.114, B:R.147, B:S.164, B:S.165, B:I.177, B:S.189, B:A.191, L:A.222 Water bridges: B:R.56, B:D.114, B:S.165, L:G.221 Salt bridges: B:R.56, B:K.69, B:K.69 CAO.13: 24 residues within 4Å: Chain M: H.216, G.221, A.222 Chain Q: R.56, K.69, T.71, V.72, F.111, A.112, V.113, D.114, R.147, S.164, S.165, L.166, G.167, H.168, F.174, P.176, V.188, S.189, K.190, A.191, L.208 19 PLIP interactions: 3 interactions with chain M, 16 interactions with chain Q Hydrogen bonds: M:A.222, Q:T.71, Q:T.71, Q:D.114, Q:R.147, Q:S.164, Q:S.165, Q:I.177, Q:S.189, Q:A.191 Water bridges: M:G.221, M:G.221, Q:S.165 Hydrophobic interactions: Q:F.111, Q:A.112, Q:L.166 Salt bridges: Q:R.56, Q:K.69, Q:K.69 CAO.14: 24 residues within 4Å: Chain N: H.216, G.221, A.222 Chain S: R.56, K.69, T.71, V.72, F.111, A.112, V.113, D.114, R.147, S.164, S.165, L.166, G.167, H.168, F.174, P.176, V.188, S.189, K.190, A.191, L.208 19 PLIP interactions: 16 interactions with chain S, 3 interactions with chain N Hydrophobic interactions: S:F.111, S:A.112, S:L.166 Hydrogen bonds: S:T.71, S:T.71, S:D.114, S:R.147, S:S.164, S:S.165, S:I.177, S:S.189, S:A.191, N:A.222 Water bridges: S:S.165, N:G.221, N:G.221 Salt bridges: S:R.56, S:K.69, S:K.69 CAO.15: 24 residues within 4Å: Chain O: H.216, G.221, A.222 Chain T: R.56, K.69, T.71, V.72, F.111, A.112, V.113, D.114, R.147, S.164, S.165, L.166, G.167, H.168, F.174, P.176, V.188, S.189, K.190, A.191, L.208 19 PLIP interactions: 2 interactions with chain O, 17 interactions with chain T Hydrogen bonds: O:A.222, T:T.71, T:D.114, T:R.147, T:S.164, T:S.165, T:I.177, T:S.189, T:A.191 Water bridges: O:G.221, T:R.56, T:D.114, T:S.165 Hydrophobic interactions: T:F.111, T:A.112, T:L.166 Salt bridges: T:R.56, T:K.69, T:K.69 CAO.16: 24 residues within 4Å: Chain P: H.216, G.221, A.222 Chain R: R.56, K.69, T.71, V.72, F.111, A.112, V.113, D.114, R.147, S.164, S.165, L.166, G.167, H.168, F.174, P.176, V.188, S.189, K.190, A.191, L.208 19 PLIP interactions: 2 interactions with chain P, 17 interactions with chain R Hydrogen bonds: P:A.222, R:T.71, R:D.114, R:R.147, R:S.164, R:S.165, R:I.177, R:S.189, R:A.191 Water bridges: P:G.221, R:R.56, R:D.114, R:S.165 Hydrophobic interactions: R:F.111, R:A.112, R:L.166 Salt bridges: R:R.56, R:K.69, R:K.69 CAO.17: 24 residues within 4Å: Chain Q: H.216, G.221, A.222 Chain U: R.56, K.69, T.71, V.72, F.111, A.112, V.113, D.114, R.147, S.164, S.165, L.166, G.167, H.168, F.174, P.176, V.188, S.189, K.190, A.191, L.208 19 PLIP interactions: 16 interactions with chain U, 3 interactions with chain Q Hydrophobic interactions: U:F.111, U:A.112, U:L.166 Hydrogen bonds: U:T.71, U:D.114, U:R.147, U:S.164, U:S.165, U:I.177, U:S.189, U:A.191, Q:A.222 Water bridges: U:R.56, U:S.165, Q:G.221, Q:G.221 Salt bridges: U:R.56, U:K.69, U:K.69 CAO.18: 24 residues within 4Å: Chain R: H.216, G.221, A.222 Chain W: R.56, K.69, T.71, V.72, F.111, A.112, V.113, D.114, R.147, S.164, S.165, L.166, G.167, H.168, F.174, P.176, V.188, S.189, K.190, A.191, L.208 19 PLIP interactions: 17 interactions with chain W, 2 interactions with chain R Hydrophobic interactions: W:F.111, W:A.112, W:L.166 Hydrogen bonds: W:T.71, W:T.71, W:D.114, W:R.147, W:S.164, W:S.165, W:I.177, W:S.189, W:A.191, R:A.222 Water bridges: W:D.114, W:S.165, R:G.221 Salt bridges: W:R.56, W:K.69, W:K.69 CAO.19: 24 residues within 4Å: Chain S: H.216, G.221, A.222 Chain X: R.56, K.69, T.71, V.72, F.111, A.112, V.113, D.114, R.147, S.164, S.165, L.166, G.167, H.168, F.174, P.176, V.188, S.189, K.190, A.191, L.208 19 PLIP interactions: 16 interactions with chain X, 3 interactions with chain S Hydrophobic interactions: X:F.111, X:A.112, X:L.166 Hydrogen bonds: X:T.71, X:D.114, X:R.147, X:S.164, X:S.165, X:I.177, X:S.189, X:A.191, S:A.222 Water bridges: X:R.56, X:S.165, S:G.221, S:G.221 Salt bridges: X:R.56, X:K.69, X:K.69 CAO.20: 24 residues within 4Å: Chain T: H.216, G.221, A.222 Chain V: R.56, K.69, T.71, V.72, F.111, A.112, V.113, D.114, R.147, S.164, S.165, L.166, G.167, H.168, F.174, P.176, V.188, S.189, K.190, A.191, L.208 19 PLIP interactions: 17 interactions with chain V, 2 interactions with chain T Hydrophobic interactions: V:F.111, V:A.112, V:L.166 Hydrogen bonds: V:T.71, V:T.71, V:D.114, V:R.147, V:S.164, V:S.165, V:I.177, V:S.189, V:A.191, T:A.222 Water bridges: V:D.114, V:S.165, T:G.221 Salt bridges: V:R.56, V:K.69, V:K.69 CAO.21: 24 residues within 4Å: Chain M: R.56, K.69, T.71, V.72, F.111, A.112, V.113, D.114, R.147, S.164, S.165, L.166, G.167, H.168, F.174, P.176, V.188, S.189, K.190, A.191, L.208 Chain U: H.216, G.221, A.222 19 PLIP interactions: 16 interactions with chain M, 3 interactions with chain U Hydrophobic interactions: M:F.111, M:A.112, M:L.166 Hydrogen bonds: M:T.71, M:T.71, M:D.114, M:R.147, M:S.164, M:S.165, M:I.177, M:S.189, M:A.191, U:A.222 Water bridges: M:S.165, U:G.221, U:G.221 Salt bridges: M:R.56, M:K.69, M:K.69 CAO.22: 24 residues within 4Å: Chain O: R.56, K.69, T.71, V.72, F.111, A.112, V.113, D.114, R.147, S.164, S.165, L.166, G.167, H.168, F.174, P.176, V.188, S.189, K.190, A.191, L.208 Chain V: H.216, G.221, A.222 19 PLIP interactions: 17 interactions with chain O, 2 interactions with chain V Hydrophobic interactions: O:F.111, O:A.112, O:L.166 Hydrogen bonds: O:T.71, O:D.114, O:R.147, O:S.164, O:S.165, O:I.177, O:S.189, O:A.191, V:A.222 Water bridges: O:R.56, O:D.114, O:S.165, V:G.221 Salt bridges: O:R.56, O:K.69, O:K.69 CAO.23: 24 residues within 4Å: Chain P: R.56, K.69, T.71, V.72, F.111, A.112, V.113, D.114, R.147, S.164, S.165, L.166, G.167, H.168, F.174, P.176, V.188, S.189, K.190, A.191, L.208 Chain W: H.216, G.221, A.222 19 PLIP interactions: 17 interactions with chain P, 2 interactions with chain W Hydrophobic interactions: P:F.111, P:A.112, P:L.166 Hydrogen bonds: P:T.71, P:D.114, P:R.147, P:S.164, P:S.165, P:I.177, P:S.189, P:A.191, W:A.222 Water bridges: P:R.56, P:D.114, P:S.165, W:G.221 Salt bridges: P:R.56, P:K.69, P:K.69 CAO.24: 24 residues within 4Å: Chain N: R.56, K.69, T.71, V.72, F.111, A.112, V.113, D.114, R.147, S.164, S.165, L.166, G.167, H.168, F.174, P.176, V.188, S.189, K.190, A.191, L.208 Chain X: H.216, G.221, A.222 19 PLIP interactions: 16 interactions with chain N, 3 interactions with chain X Hydrophobic interactions: N:F.111, N:A.112, N:L.166 Hydrogen bonds: N:T.71, N:T.71, N:D.114, N:R.147, N:S.164, N:S.165, N:I.177, N:S.189, N:A.191, X:A.222 Water bridges: N:S.165, X:G.221, X:G.221 Salt bridges: N:R.56, N:K.69, N:K.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mattevi, A. et al., Crystallographic analysis of substrate binding and catalysis in dihydrolipoyl transacetylase (E2p). Biochemistry (1993)

Release Date

1993-10-31

Peptides

DIHYDROLIPOYL-TRANSACETYLASE: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

M
A

N
A

O
A

P
A

Q
A

R
A

S
A

T
A

U
A

V
A

W
A

X
A

DIHYDROLIPOYL-TRANSACETYLASE

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