SMTL ID : 1eae.1

ATOMIC STRUCTURE OF THE CUBIC CORE OF THE PYRUVATE DEHYDROGENASE MULTIENZYME COMPLEX

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-24-mer

Ligands

24 x LPM: 6,8-DIMERCAPTO-OCTANOIC ACID AMIDE(Non-covalent)

LPM.1: 10 residues within 4Å: Chain A: H.216 Chain E: G.27, N.30, L.31, L.119, V.121, P.176, I.177, N.179, I.185 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:L.119, E:N.179, E:I.185 Hydrogen bonds: E:N.30 LPM.2: 10 residues within 4Å: Chain B: H.216 Chain G: G.27, N.30, L.31, L.119, V.121, P.176, I.177, N.179, I.185 4 PLIP interactions: 4 interactions with chain G Hydrophobic interactions: G:L.119, G:N.179, G:I.185 Hydrogen bonds: G:N.30 LPM.3: 10 residues within 4Å: Chain C: H.216 Chain H: G.27, N.30, L.31, L.119, V.121, P.176, I.177, N.179, I.185 4 PLIP interactions: 4 interactions with chain H Hydrophobic interactions: H:L.119, H:N.179, H:I.185 Hydrogen bonds: H:N.30 LPM.4: 10 residues within 4Å: Chain D: H.216 Chain F: G.27, N.30, L.31, L.119, V.121, P.176, I.177, N.179, I.185 4 PLIP interactions: 4 interactions with chain F Hydrophobic interactions: F:L.119, F:N.179, F:I.185 Hydrogen bonds: F:N.30 LPM.5: 10 residues within 4Å: Chain E: H.216 Chain I: G.27, N.30, L.31, L.119, V.121, P.176, I.177, N.179, I.185 4 PLIP interactions: 4 interactions with chain I Hydrophobic interactions: I:L.119, I:N.179, I:I.185 Hydrogen bonds: I:N.30 LPM.6: 10 residues within 4Å: Chain F: H.216 Chain K: G.27, N.30, L.31, L.119, V.121, P.176, I.177, N.179, I.185 4 PLIP interactions: 4 interactions with chain K Hydrophobic interactions: K:L.119, K:N.179, K:I.185 Hydrogen bonds: K:N.30 LPM.7: 10 residues within 4Å: Chain G: H.216 Chain L: G.27, N.30, L.31, L.119, V.121, P.176, I.177, N.179, I.185 4 PLIP interactions: 4 interactions with chain L Hydrophobic interactions: L:L.119, L:N.179, L:I.185 Hydrogen bonds: L:N.30 LPM.8: 10 residues within 4Å: Chain H: H.216 Chain J: G.27, N.30, L.31, L.119, V.121, P.176, I.177, N.179, I.185 4 PLIP interactions: 4 interactions with chain J Hydrophobic interactions: J:L.119, J:N.179, J:I.185 Hydrogen bonds: J:N.30 LPM.9: 10 residues within 4Å: Chain A: G.27, N.30, L.31, L.119, V.121, P.176, I.177, N.179, I.185 Chain I: H.216 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.119, A:N.179, A:I.185 Hydrogen bonds: A:N.30 LPM.10: 10 residues within 4Å: Chain C: G.27, N.30, L.31, L.119, V.121, P.176, I.177, N.179, I.185 Chain J: H.216 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:L.119, C:N.179, C:I.185 Hydrogen bonds: C:N.30 LPM.11: 10 residues within 4Å: Chain D: G.27, N.30, L.31, L.119, V.121, P.176, I.177, N.179, I.185 Chain K: H.216 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:L.119, D:N.179, D:I.185 Hydrogen bonds: D:N.30 LPM.12: 10 residues within 4Å: Chain B: G.27, N.30, L.31, L.119, V.121, P.176, I.177, N.179, I.185 Chain L: H.216 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:L.119, B:N.179, B:I.185 Hydrogen bonds: B:N.30 LPM.13: 10 residues within 4Å: Chain M: H.216 Chain Q: G.27, N.30, L.31, L.119, V.121, P.176, I.177, N.179, I.185 4 PLIP interactions: 4 interactions with chain Q Hydrophobic interactions: Q:L.119, Q:N.179, Q:I.185 Hydrogen bonds: Q:N.30 LPM.14: 10 residues within 4Å: Chain N: H.216 Chain S: G.27, N.30, L.31, L.119, V.121, P.176, I.177, N.179, I.185 4 PLIP interactions: 4 interactions with chain S Hydrophobic interactions: S:L.119, S:N.179, S:I.185 Hydrogen bonds: S:N.30 LPM.15: 10 residues within 4Å: Chain O: H.216 Chain T: G.27, N.30, L.31, L.119, V.121, P.176, I.177, N.179, I.185 4 PLIP interactions: 4 interactions with chain T Hydrophobic interactions: T:L.119, T:N.179, T:I.185 Hydrogen bonds: T:N.30 LPM.16: 10 residues within 4Å: Chain P: H.216 Chain R: G.27, N.30, L.31, L.119, V.121, P.176, I.177, N.179, I.185 4 PLIP interactions: 4 interactions with chain R Hydrophobic interactions: R:L.119, R:N.179, R:I.185 Hydrogen bonds: R:N.30 LPM.17: 10 residues within 4Å: Chain Q: H.216 Chain U: G.27, N.30, L.31, L.119, V.121, P.176, I.177, N.179, I.185 4 PLIP interactions: 4 interactions with chain U Hydrophobic interactions: U:L.119, U:N.179, U:I.185 Hydrogen bonds: U:N.30 LPM.18: 10 residues within 4Å: Chain R: H.216 Chain W: G.27, N.30, L.31, L.119, V.121, P.176, I.177, N.179, I.185 4 PLIP interactions: 4 interactions with chain W Hydrophobic interactions: W:L.119, W:N.179, W:I.185 Hydrogen bonds: W:N.30 LPM.19: 10 residues within 4Å: Chain S: H.216 Chain X: G.27, N.30, L.31, L.119, V.121, P.176, I.177, N.179, I.185 4 PLIP interactions: 4 interactions with chain X Hydrophobic interactions: X:L.119, X:N.179, X:I.185 Hydrogen bonds: X:N.30 LPM.20: 10 residues within 4Å: Chain T: H.216 Chain V: G.27, N.30, L.31, L.119, V.121, P.176, I.177, N.179, I.185 4 PLIP interactions: 4 interactions with chain V Hydrophobic interactions: V:L.119, V:N.179, V:I.185 Hydrogen bonds: V:N.30 LPM.21: 10 residues within 4Å: Chain M: G.27, N.30, L.31, L.119, V.121, P.176, I.177, N.179, I.185 Chain U: H.216 4 PLIP interactions: 4 interactions with chain M Hydrophobic interactions: M:L.119, M:N.179, M:I.185 Hydrogen bonds: M:N.30 LPM.22: 10 residues within 4Å: Chain O: G.27, N.30, L.31, L.119, V.121, P.176, I.177, N.179, I.185 Chain V: H.216 4 PLIP interactions: 4 interactions with chain O Hydrophobic interactions: O:L.119, O:N.179, O:I.185 Hydrogen bonds: O:N.30 LPM.23: 10 residues within 4Å: Chain P: G.27, N.30, L.31, L.119, V.121, P.176, I.177, N.179, I.185 Chain W: H.216 4 PLIP interactions: 4 interactions with chain P Hydrophobic interactions: P:L.119, P:N.179, P:I.185 Hydrogen bonds: P:N.30 LPM.24: 10 residues within 4Å: Chain N: G.27, N.30, L.31, L.119, V.121, P.176, I.177, N.179, I.185 Chain X: H.216 4 PLIP interactions: 4 interactions with chain N Hydrophobic interactions: N:L.119, N:N.179, N:I.185 Hydrogen bonds: N:N.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mattevi, A. et al., Crystallographic analysis of substrate binding and catalysis in dihydrolipoyl transacetylase (E2p). Biochemistry (1993)

Release Date

1993-10-31

Peptides

DIHYDROLIPOYL-TRANSACETYLASE: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

M
A

N
A

O
A

P
A

Q
A

R
A

S
A

T
A

U
A

V
A

W
A

X
A

DIHYDROLIPOYL-TRANSACETYLASE

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