SMTL ID : 1eb9.1

Structure Determinants of Substrate Specificity of Hydroxynitrile Lyase from Manihot esculenta

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

8 x HBA: P-HYDROXYBENZALDEHYDE(Non-covalent)

HBA.1: 8 residues within 4Å: Chain A: T.15, I.16, S.84, C.85, M.151, L.153, L.183 Ligands: HBA.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.16, A:I.16, A:L.153 Hydrogen bonds: A:T.15, A:S.84, A:C.85 HBA.2: 7 residues within 4Å: Chain A: L.126, F.129, A.132, L.153, L.162, I.214 Ligands: HBA.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.153, A:I.214 Hydrogen bonds: A:S.84, A:S.84 HBA.3: 8 residues within 4Å: Chain B: T.15, I.16, S.84, C.85, L.125, M.151, L.183 Ligands: HBA.4 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:I.16, B:I.16, B:L.125, B:L.183 Hydrogen bonds: B:S.84, B:C.85 HBA.4: 6 residues within 4Å: Chain B: L.126, F.129, A.132, L.153, I.214 Ligands: HBA.3 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.153, B:I.214, B:I.214 Hydrogen bonds: B:S.84, B:S.84 HBA.5: 8 residues within 4Å: Chain C: T.15, I.16, S.84, C.85, M.151, L.153, L.183 Ligands: HBA.6 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:I.16, C:I.16, C:L.153 Hydrogen bonds: C:S.84, C:C.85 HBA.6: 7 residues within 4Å: Chain C: L.126, F.129, A.132, L.153, L.162, I.214 Ligands: HBA.5 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:L.153, C:I.214 Hydrogen bonds: C:S.84, C:S.84 HBA.7: 8 residues within 4Å: Chain D: T.15, I.16, S.84, C.85, L.125, M.151, L.183 Ligands: HBA.8 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:I.16, D:I.16, D:L.125, D:L.183 Hydrogen bonds: D:T.15, D:S.84, D:C.85 HBA.8: 6 residues within 4Å: Chain D: L.126, F.129, A.132, L.153, I.214 Ligands: HBA.7 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:L.153, D:I.214, D:I.214 Hydrogen bonds: D:S.84, D:S.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lauble, H. et al., Structure Determinants of Substrate Specificity of Hydroxynitrile Lyase from Manihot Esculenta. Protein Sci. (2002)

Release Date

2002-01-01

Peptides

HYDROXYNITRILE LYASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

HYDROXYNITRILE LYASE

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