- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x XYH: XYLAROHYDROXAMATE(Non-covalent)
XYH.2: 18 residues within 4Å:- Chain A: N.27, H.32, T.103, F.104, Y.150, F.152, K.205, K.207, D.235, N.237, E.260, N.289, H.339, S.340, N.341, H.368, R.422
- Ligands: MG.1
20 PLIP interactions:20 interactions with chain A- Hydrogen bonds: A:N.27, A:T.103, A:T.103, A:Y.150, A:K.205, A:K.207, A:D.235, A:N.237, A:N.289, A:S.340, A:N.341, A:R.422, A:R.422
- Water bridges: A:S.340, A:S.340, A:H.368
- Salt bridges: A:H.32, A:K.207, A:H.368, A:R.422
XYH.6: 18 residues within 4Å:- Chain B: N.27, H.32, T.103, F.104, Y.150, F.152, K.205, K.207, D.235, N.237, E.260, N.289, H.339, S.340, N.341, H.368, R.422
- Ligands: MG.5
17 PLIP interactions:17 interactions with chain B- Hydrogen bonds: B:T.103, B:T.103, B:T.103, B:T.103, B:K.205, B:K.207, B:D.235, B:N.237, B:N.289, B:S.340, B:N.341, B:R.422
- Water bridges: B:S.340
- Salt bridges: B:H.32, B:K.207, B:H.368, B:R.422
XYH.9: 18 residues within 4Å:- Chain C: N.27, H.32, T.103, F.104, Y.150, F.152, K.205, K.207, D.235, N.237, E.260, N.289, H.339, S.340, N.341, H.368, R.422
- Ligands: MG.8
18 PLIP interactions:18 interactions with chain C- Hydrogen bonds: C:N.27, C:N.27, C:T.103, C:T.103, C:T.103, C:Y.150, C:K.205, C:K.207, C:D.235, C:N.237, C:N.289, C:S.340, C:R.422
- Water bridges: C:S.340
- Salt bridges: C:H.32, C:K.207, C:H.368, C:R.422
XYH.11: 18 residues within 4Å:- Chain D: N.27, H.32, T.103, F.104, Y.150, F.152, K.205, K.207, D.235, N.237, E.260, N.289, H.339, S.340, N.341, H.368, R.422
- Ligands: MG.10
17 PLIP interactions:17 interactions with chain D- Hydrogen bonds: D:T.103, D:T.103, D:T.103, D:Y.150, D:K.205, D:K.207, D:D.235, D:N.237, D:S.340, D:R.422
- Water bridges: D:N.289, D:N.289, D:S.340
- Salt bridges: D:H.32, D:K.207, D:H.368, D:R.422
- 4 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)
IPA.3: 5 residues within 4Å:- Chain A: G.299, L.302, S.303
- Chain C: L.302, F.332
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain A- Hydrophobic interactions: C:L.302, C:F.332, A:L.302
- Hydrogen bonds: A:S.303
- Water bridges: A:S.303
IPA.4: 5 residues within 4Å:- Chain A: L.302, F.332
- Chain C: G.299, L.302, S.303
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain C- Hydrophobic interactions: A:F.332
- Water bridges: A:L.302, C:L.302
- Hydrogen bonds: C:S.303
IPA.7: 5 residues within 4Å:- Chain B: L.302, F.332
- Chain D: G.299, L.302, S.303
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain D- Hydrophobic interactions: B:L.302, B:F.332, D:L.302
- Hydrogen bonds: D:S.303
IPA.12: 5 residues within 4Å:- Chain B: G.299, L.302, S.303
- Chain D: L.302, F.332
4 PLIP interactions:2 interactions with chain D, 2 interactions with chain B- Hydrophobic interactions: D:L.302, D:F.332
- Hydrogen bonds: B:G.299, B:S.303
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gulick, A.M. et al., Evolution of enzymatic activities in the enolase superfamily: crystallographic and mutagenesis studies of the reaction catalyzed by D-glucarate dehydratase from Escherichia coli. Biochemistry (2000)
- Release Date
- 2000-05-23
- Peptides
- GLUCARATE DEHYDRATASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x XYH: XYLAROHYDROXAMATE(Non-covalent)
- 4 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gulick, A.M. et al., Evolution of enzymatic activities in the enolase superfamily: crystallographic and mutagenesis studies of the reaction catalyzed by D-glucarate dehydratase from Escherichia coli. Biochemistry (2000)
- Release Date
- 2000-05-23
- Peptides
- GLUCARATE DEHYDRATASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D