SMTL ID : 1edh.1

E-CADHERIN DOMAINS 1 AND 2 IN COMPLEX WITH CALCIUM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x HG: MERCURY (II) ION(Non-covalent)

HG.1: 2 residues within 4Å: Chain A: C.11, L.23 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.11 HG.5: 3 residues within 4Å: Chain B: C.11, E.15, L.23 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.11

6 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: N.104, N.106, D.136, D.138, N.145, D.197 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.106, A:D.136, A:D.138, A:N.145, A:D.197 CA.3: 8 residues within 4Å: Chain A: E.13, E.71, D.102, Q.103, D.105, N.106, D.138 Ligands: CA.4 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.13, A:D.102, A:Q.103, A:D.105, A:D.138 CA.4: 5 residues within 4Å: Chain A: E.13, D.69, E.71, D.105 Ligands: CA.3 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.13, A:D.69, A:E.71, A:D.105, H2O.1, H2O.4 CA.6: 6 residues within 4Å: Chain B: N.104, N.106, D.136, D.138, N.145, D.197 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:N.106, B:D.136, B:D.138, B:N.145, B:D.197 CA.7: 7 residues within 4Å: Chain B: E.13, E.71, D.102, Q.103, D.105, N.106, D.138 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.13, B:E.71, B:E.71, B:D.102, B:D.138 CA.8: 4 residues within 4Å: Chain B: E.13, D.69, E.71, D.105 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.13, B:D.69, B:E.71, B:D.105, H2O.8, H2O.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nagar, B. et al., Structural basis of calcium-induced E-cadherin rigidification and dimerization. Nature (1996)

Release Date

1997-01-11

Peptides

E-CADHERIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E-CADHERIN