SMTL ID : 1ee4.1 (1 other biounit)

CRYSTAL STRUCTURE OF YEAST KARYOPHERIN (IMPORTIN) ALPHA IN A COMPLEX WITH A C-MYC NLS PEPTIDE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x PRO- ALA- ALA- LYS- ARG- VAL- LYS- LEU- ASP: MYC PROTO-ONCOGENE PROTEIN(Non-covalent)

PRO-ALA-ALA-LYS-ARG-VAL-LYS-LEU-ASP.1: 21 residues within 4Å: Chain A: S.30, R.31, E.32, W.67, N.71, A.73, S.74, G.75, T.80, E.105, Q.106, W.109, G.112, N.113, G.116, D.117, W.151, N.155, R.158, D.190, W.193 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:W.67, A:W.109, A:W.109, A:W.109, A:W.151 Hydrogen bonds: A:N.71, A:N.71, A:A.73, A:Q.106, A:Q.106, A:N.113, A:N.113, A:D.117, A:N.155, A:R.158, A:R.158 Water bridges: A:E.32, A:D.190, A:D.190 Salt bridges: A:D.190 pi-Cation interactions: A:W.151 PRO-ALA-ALA-LYS-ARG-VAL-LYS-LEU-ASP.2: 11 residues within 4Å: Chain A: K.160, V.241, T.242, G.243, T.248, W.277, S.280, N.281, A.284, E.316, W.319 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:T.242 Hydrogen bonds: A:K.160, A:T.248, A:S.280, A:S.280, A:N.281, A:N.281, A:N.281 Water bridges: A:D.200, A:N.281, A:N.323 Salt bridges: A:E.316 pi-Cation interactions: A:W.319

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Conti, E. et al., Crystallographic analysis of the specific yet versatile recognition of distinct nuclear localization signals by karyopherin alpha. Structure Fold.Des. (2000)

Release Date

2000-03-29

Peptides

KARYOPHERIN ALPHA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

KARYOPHERIN ALPHA

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