SMTL ID : 1ehw.1

HUMAN NUCLEOSIDE DIPHOSPHATE KINASE 4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-hexamer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: H.131, I.132, S.133, R.134 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:I.132, A:S.133, A:R.134 Salt bridges: A:H.131, A:R.134 Water bridges: C:Y.101, C:Y.101 SO4.2: 4 residues within 4Å: Chain A: R.108, I.111, T.114, R.125 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.114 Water bridges: A:R.108, A:H.138 Salt bridges: A:R.108, A:R.125 SO4.3: 3 residues within 4Å: Chain B: R.108, T.114, R.125 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.135 Water bridges: B:R.125, B:R.125, B:H.138 Salt bridges: B:R.108, B:R.125 SO4.4: 4 residues within 4Å: Chain C: H.131, I.132, S.133, R.134 7 PLIP interactions: 5 interactions with chain C, 2 interactions with chain E Hydrogen bonds: C:I.132, C:S.133, C:R.134 Salt bridges: C:H.131, C:R.134 Water bridges: E:Y.101, E:Y.101 SO4.5: 4 residues within 4Å: Chain C: R.108, I.111, T.114, R.125 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:T.114 Water bridges: C:R.108, C:H.138 Salt bridges: C:R.108, C:R.125 SO4.6: 3 residues within 4Å: Chain D: R.108, T.114, R.125 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:N.135 Water bridges: D:R.125, D:R.125, D:R.125 Salt bridges: D:R.108, D:R.125 SO4.7: 4 residues within 4Å: Chain E: H.131, I.132, S.133, R.134 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:I.132, E:S.133, E:R.134 Salt bridges: E:H.131, E:R.134 SO4.8: 4 residues within 4Å: Chain E: R.108, I.111, T.114, R.125 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:T.114 Water bridges: E:R.108, E:R.125 Salt bridges: E:R.108, E:R.125 SO4.9: 3 residues within 4Å: Chain F: R.108, T.114, R.125 6 PLIP interactions: 6 interactions with chain F Hydrogen bonds: F:N.135 Water bridges: F:R.125, F:R.125, F:R.125 Salt bridges: F:R.108, F:R.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Milon, L. et al., The human nm23-H4 gene product is a mitochondrial nucleoside diphosphate kinase. J.Biol.Chem. (2000)

Release Date

2000-05-17

Peptides

NUCLEOSIDE DIPHOSPHATE KINASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

NUCLEOSIDE DIPHOSPHATE KINASE