SMTL ID : 1ej2.1 (1 other biounit)

Crystal structure of methanobacterium thermoautotrophicum nicotinamide mononucleotide adenylyltransferase with bound NAD+

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: R.11, R.47, S.131, G.132, T.133, R.136 Ligands: NA.2, NAD.3 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.132, A:T.133, A:T.133 Water bridges: A:T.133, A:R.136 Salt bridges: A:R.11, A:R.47, A:R.136

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: R.11, M.12, Q.13 Ligands: SO4.1, NAD.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.13

1 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.3: 27 residues within 4Å: Chain A: L.8, V.9, G.10, R.11, M.12, H.16, G.18, H.19, V.22, G.38, S.39, D.80, I.81, N.84, W.87, S.103, G.104, N.105, L.107, V.108, L.111, P.123, L.124, F.125, Y.130 Ligands: SO4.1, NA.2 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:W.87, A:W.87, A:L.107, A:V.108, A:L.111 Hydrogen bonds: A:R.11, A:R.11, A:M.12, A:G.38, A:I.81, A:I.81, A:G.104, A:N.105, A:N.105, A:F.125, A:F.125 Water bridges: A:V.9, A:S.39, A:D.80, A:N.84, A:S.103 Salt bridges: A:H.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saridakis, V. et al., Insights into ligand binding and catalysis of a central step in NAD+ synthesis: structures of Methanobacterium thermoautotrophicum NMN adenylyltransferase complexes. J.Biol.Chem. (2001)

Release Date

2001-03-14

Peptides

NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE

Related Entries With Identical Sequence