SMTL ID : 1elu.1

COMPLEX BETWEEN THE CYSTINE C-S LYASE C-DES AND ITS REACTION PRODUCT CYSTEINE PERSULFIDE.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-dimer

Ligands

2 x K: POTASSIUM ION(Non-covalent)

K.1: 4 residues within 4Å: Chain A: L.313, N.314, L.316, V.319 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:N.314, A:L.316, A:V.319 K.4: 4 residues within 4Å: Chain B: L.313, N.314, L.316, V.319 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:N.314, B:L.316, B:V.319, H2O.24

2 x PDA: 2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID(Non-covalent)

PDA.2: 21 residues within 4Å: Chain A: G.23, G.24, N.84, V.85, T.86, H.111, S.161, W.165, D.194, A.196, Q.197, T.217, H.219, K.220, R.357, R.366 Chain B: F.49, W.248, A.272, T.273 Ligands: CSS.3 16 PLIP interactions: 12 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:V.85, A:T.86, A:T.86, A:Q.197, B:T.273, B:T.273, B:T.273 Water bridges: A:G.24 Salt bridges: A:H.111, A:H.219, A:K.220, A:K.220, A:R.357, A:R.366 pi-Stacking: A:H.111 Hydrophobic interactions: B:F.49 PDA.5: 20 residues within 4Å: Chain A: F.49, W.248, A.272, T.273 Chain B: G.23, G.24, N.84, V.85, T.86, H.111, S.161, W.165, D.194, A.196, Q.197, T.217, H.219, K.220, R.357, R.366 18 PLIP interactions: 14 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:W.165, A:F.49 Hydrogen bonds: B:N.84, B:V.85, B:T.86, B:T.86, B:Q.197, A:T.273, A:T.273, A:T.273 Water bridges: B:G.24, B:K.220 Salt bridges: B:H.219, B:K.220, B:K.220, B:R.357, B:R.366 pi-Stacking: B:H.111

1 x CSS: S-MERCAPTOCYSTEINE(Non-covalent)

CSS.3: 7 residues within 4Å: Chain A: H.111, P.112, W.165, R.357 Chain B: W.248, Y.253 Ligands: PDA.2 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.111, A:R.357

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Clausen, T. et al., Crystal structure of the cystine C-S lyase from Synechocystis: stabilization of cysteine persulfide for FeS cluster biosynthesis. Proc.Natl.Acad.Sci.USA (2000)

Release Date

2000-04-19

Peptides

L-CYSTEINE/L-CYSTINE C-S LYASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

L-CYSTEINE/L-CYSTINE C-S LYASE

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