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SMTL ID : 1elu.1
COMPLEX BETWEEN THE CYSTINE C-S LYASE C-DES AND ITS REACTION PRODUCT CYSTEINE PERSULFIDE.
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.55 Å
Oligo State
homo-dimer
Ligands
2 x
K
:
POTASSIUM ION
(Non-covalent)
K.1:
4 residues within 4Å:
Chain A:
L.313
,
N.314
,
L.316
,
V.319
3
PLIP interactions
:
3 interactions with chain A
Metal complexes:
A:N.314
,
A:L.316
,
A:V.319
K.4:
4 residues within 4Å:
Chain B:
L.313
,
N.314
,
L.316
,
V.319
4
PLIP interactions
:
3 interactions with chain B
,
1 Ligand-Water interactions
Metal complexes:
B:N.314
,
B:L.316
,
B:V.319
,
H
2
O.24
2 x
PDA
:
2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID
(Non-covalent)
PDA.2:
21 residues within 4Å:
Chain A:
G.23
,
G.24
,
N.84
,
V.85
,
T.86
,
H.111
,
S.161
,
W.165
,
D.194
,
A.196
,
Q.197
,
T.217
,
H.219
,
K.220
,
R.357
,
R.366
Chain B:
F.49
,
W.248
,
A.272
,
T.273
Ligands:
CSS.3
16
PLIP interactions
:
12 interactions with chain A
,
4 interactions with chain B
Hydrogen bonds:
A:V.85
,
A:T.86
,
A:T.86
,
A:Q.197
,
B:T.273
,
B:T.273
,
B:T.273
Water bridges:
A:G.24
Salt bridges:
A:H.111
,
A:H.219
,
A:K.220
,
A:K.220
,
A:R.357
,
A:R.366
pi-Stacking:
A:H.111
Hydrophobic interactions:
B:F.49
PDA.5:
20 residues within 4Å:
Chain A:
F.49
,
W.248
,
A.272
,
T.273
Chain B:
G.23
,
G.24
,
N.84
,
V.85
,
T.86
,
H.111
,
S.161
,
W.165
,
D.194
,
A.196
,
Q.197
,
T.217
,
H.219
,
K.220
,
R.357
,
R.366
18
PLIP interactions
:
4 interactions with chain A
,
14 interactions with chain B
Hydrophobic interactions:
A:F.49
,
B:W.165
Hydrogen bonds:
A:T.273
,
A:T.273
,
A:T.273
,
B:N.84
,
B:V.85
,
B:T.86
,
B:T.86
,
B:Q.197
Water bridges:
B:G.24
,
B:K.220
Salt bridges:
B:H.219
,
B:K.220
,
B:K.220
,
B:R.357
,
B:R.366
pi-Stacking:
B:H.111
1 x
CSS
:
S-MERCAPTOCYSTEINE
(Non-covalent)
CSS.3:
7 residues within 4Å:
Chain A:
H.111
,
P.112
,
W.165
,
R.357
Chain B:
W.248
,
Y.253
Ligands:
PDA.2
2
PLIP interactions
:
2 interactions with chain A
Salt bridges:
A:H.111
,
A:R.357
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Clausen, T. et al., Crystal structure of the cystine C-S lyase from Synechocystis: stabilization of cysteine persulfide for FeS cluster biosynthesis. Proc.Natl.Acad.Sci.USA (2000)
Release Date
2000-04-19
Peptides
L-CYSTEINE/L-CYSTINE C-S LYASE:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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L-CYSTEINE/L-CYSTINE C-S LYASE
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