SMTL ID : 1ep5.1

CRYSTAL STRUCTURE OF THE CONSERVED CORE DOMAIN OF VENEZUALAN EQUINE ENCEPHALITIS CAPSID PROTEIN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-trimer

Ligands

7 x URE: UREA(Non-functional Binders)

URE.1: 2 residues within 4Å: Chain A: P.78, Q.79 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.79, A:Q.79 URE.2: 3 residues within 4Å: Chain A: T.74, H.75, R.118 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.74, A:H.75, A:H.75 Water bridges: A:Y.73 URE.3: 3 residues within 4Å: Chain A: Y.81, P.99, R.132 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.81, A:Y.81, A:R.132 Water bridges: A:R.132, A:R.132 URE.4: 2 residues within 4Å: Chain A: G.87, A.88 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.88 URE.5: 2 residues within 4Å: Chain A: H.85, H.86 2 PLIP interactions: 2 interactions with chain A Water bridges: A:H.86, A:R.110 URE.8: 2 residues within 4Å: Chain B: Y.59, T.146 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.146, B:T.146 URE.9: 2 residues within 4Å: Chain B: T.74, H.75 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.74, B:T.74, B:H.75, B:H.75, B:R.118 Water bridges: B:E.142

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 2 residues within 4Å: Chain B: G.26, R.67 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.67 SO4.7: 2 residues within 4Å: Chain B: P.63, Q.64 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.64 Water bridges: B:N.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Watowich, S.J. et al., CRYSTAL STRUCTURE OF THE CONSERVED CORE DOMAIN OF VENEZUALAN EQUINE ENCEPHALITIS CAPSID PROTEIN. To Be Published

Release Date

2003-07-08

Peptides

CAPSID PROTEIN C: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
C

CAPSID PROTEIN C

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