SMTL ID : 1epz.1

CRYSTAL STRUCTURE OF DTDP-6-DEOXY-D-XYLO-4-HEXULOASE 3,5-EPIMERASE FROM METHANOBACTERIUM THERMOAUTOTROPHICUM WITH BOUND LIGAND.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x TYD: THYMIDINE-5'-DIPHOSPHATE(Non-covalent)

TYD.1: 10 residues within 4Å: Chain A: Q.49, N.51, R.61, H.64, Y.139, K.171 Chain B: Y.22, R.26, F.29, E.31 14 PLIP interactions: 8 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:Y.139, B:F.29 Hydrogen bonds: A:Q.49, A:N.51, B:E.31 Water bridges: A:K.171, B:R.26, B:R.26 Salt bridges: A:R.61, A:H.64, A:K.171, B:R.26, B:R.26 pi-Stacking: A:Y.139 TYD.2: 10 residues within 4Å: Chain A: Y.22, R.26, F.29, E.31 Chain B: Q.49, N.51, R.61, H.64, Y.139, K.171 18 PLIP interactions: 10 interactions with chain B, 8 interactions with chain A Hydrophobic interactions: B:Y.139, A:F.29 Hydrogen bonds: B:Q.49, B:N.51, A:E.31, A:E.31 Water bridges: B:H.64, B:Y.133, B:K.171, A:Y.22, A:R.26, A:R.26 Salt bridges: B:R.61, B:H.64, B:K.171, A:R.26, A:R.26 pi-Stacking: B:Y.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Christendat, D. et al., Crystal structure of dTDP-4-keto-6-deoxy-D-hexulose 3,5-epimerase from Methanobacterium thermoautotrophicum complexed with dTDP. J.Biol.Chem. (2000)

Release Date

2000-12-13

Peptides

DTDP-6-DEOXY-D-XYLO-4-HEXULOSE 3,5-EPIMERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

DTDP-6-DEOXY-D-XYLO-4-HEXULOSE 3,5-EPIMERASE

Related Entries With Identical Sequence