SMTL ID : 1esq.1

CRYSTAL STRUCTURE OF THIAZOLE KINASE MUTANT (C198S) WITH ATP AND THIAZOLE PHOSPHATE.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-trimer

Ligands

6 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 4 residues within 4Å: Chain A: V.108, R.133 Ligands: ATP.3, TZP.4 No protein-ligand interaction detected (PLIP) MG.2: 2 residues within 4Å: Ligands: ATP.3, TZP.4 No protein-ligand interaction detected (PLIP) MG.5: 3 residues within 4Å: Chain B: E.138 Ligands: ATP.8, TZP.9 No protein-ligand interaction detected (PLIP) MG.6: 2 residues within 4Å: Ligands: ATP.8, TZP.9 No protein-ligand interaction detected (PLIP) MG.10: 4 residues within 4Å: Chain C: D.106, R.133 Ligands: ATP.12, TZP.13 No protein-ligand interaction detected (PLIP) MG.11: 3 residues within 4Å: Chain C: L.202 Ligands: ATP.12, TZP.13 No protein-ligand interaction detected (PLIP)

3 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.3: 18 residues within 4Å: Chain A: R.133, N.135, T.180, G.181, E.182, D.184, N.197, G.198, H.199, K.200, L.202, T.203, G.209, L.212, Y.237 Ligands: MG.1, MG.2, TZP.4 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.135, A:T.180, A:G.181, A:D.184, A:G.209 Water bridges: A:D.184 Salt bridges: A:R.133, A:R.133 ATP.8: 18 residues within 4Å: Chain B: R.133, N.135, T.180, G.181, E.182, D.184, N.197, G.198, H.199, K.200, L.202, T.203, G.209, L.212, Y.237 Ligands: MG.5, MG.6, TZP.9 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:N.135, B:T.180, B:G.181, B:E.182, B:E.182, B:D.184, B:T.203, B:G.209 Water bridges: B:R.133 Salt bridges: B:R.133, B:R.133 ATP.12: 19 residues within 4Å: Chain C: R.133, N.135, T.180, G.181, E.182, D.184, N.197, G.198, H.199, K.200, L.202, T.203, G.209, L.212, I.234, Y.237 Ligands: MG.10, MG.11, TZP.13 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:T.180, C:D.184, C:G.209 Water bridges: C:D.184 Salt bridges: C:R.133, C:R.133

3 x TZP: 4-METHYL-5-HYDROXYETHYLTHIAZOLE PHOSPHATE(Non-covalent)

TZP.4: 16 residues within 4Å: Chain A: N.37, V.39, V.40, G.79, T.206, G.207, A.208, G.209, S.210 Chain B: A.45, P.55, V.56, M.57 Ligands: MG.1, MG.2, ATP.3 11 PLIP interactions: 8 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:V.39, A:V.40, B:A.45, B:P.55 Hydrogen bonds: A:T.206, A:G.207, A:G.207, A:A.208, A:G.209, A:S.210, B:M.57 TZP.9: 15 residues within 4Å: Chain B: N.37, G.79, T.80, V.108, T.206, G.207, A.208, G.209, S.210 Chain C: P.55, V.56, M.57 Ligands: MG.5, MG.6, ATP.8 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:G.207, B:G.207, B:A.208, B:G.209, B:S.210, C:M.57 Water bridges: B:T.206 TZP.13: 17 residues within 4Å: Chain A: A.45, P.55, V.56, M.57 Chain C: N.37, V.39, V.40, G.79, T.80, T.206, G.207, A.208, G.209, S.210 Ligands: MG.10, MG.11, ATP.12 8 PLIP interactions: 5 interactions with chain C, 3 interactions with chain A Hydrophobic interactions: C:V.40, A:A.45, A:P.55 Hydrogen bonds: C:G.207, C:G.207, C:G.209, C:S.210, A:M.57

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 3 residues within 4Å: Chain A: N.38 Chain B: N.38 Chain C: N.38 5 PLIP interactions: 2 interactions with chain A, 2 interactions with chain C, 1 interactions with chain B Hydrogen bonds: A:N.38, C:N.38, B:N.38 Water bridges: A:N.38, C:N.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Campobasso, N. et al., Crystal structure of 4-methyl-5-beta-hydroxyethylthiazole kinase from Bacillus subtilis at 1.5 A resolution. Biochemistry (2000)

Release Date

2000-08-09

Peptides

HYDROXYETHYLTHIAZOLE KINASE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

HYDROXYETHYLTHIAZOLE KINASE

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