- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.30 Å
- Oligo State
- monomer
- Ligands
- 3 x GLC: alpha-D-glucopyranose(Non-covalent)
- 1 x SO4: SULFATE ION(Non-functional Binders)
- 1 x CD: CADMIUM ION(Non-covalent)
- 2 x MGD: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE(Non-covalent)
MGD.6: 35 residues within 4Å:- Chain A: Y.114, G.115, W.116, K.117, S.118, C.125, Y.146, S.147, R.326, G.432, G.433, N.434, H.438, Q.440, Q.458, D.459, F.460, T.463, A.475, R.481, D.511, A.641, H.643, L.648, H.649, S.650, Q.651, E.715, N.737, G.754, Q.755
- Ligands: MGD.7, 6MO.8, O.9, O.10
26 PLIP interactions:26 interactions with chain A- Hydrogen bonds: A:W.116, A:K.117, A:R.326, A:G.432, A:N.434, A:H.438, A:Q.440, A:Q.458, A:Q.458, A:R.481, A:R.481, A:H.643, A:L.648, A:S.650, A:Q.651, A:Q.651, A:N.737, A:N.737, A:Q.755
- Water bridges: A:S.118, A:D.511, A:Q.651
- Salt bridges: A:H.438, A:D.459, A:D.511, A:H.649
MGD.7: 37 residues within 4Å:- Chain A: Q.41, W.116, S.147, A.185, A.186, D.187, K.190, T.191, E.193, I.194, I.220, N.221, P.222, V.223, T.225, P.240, Q.241, D.243, G.321, W.322, S.323, I.324, R.326, M.327, H.359, V.640, S.642, H.643, P.644, K.645, R.647, L.648, H.649, Q.755
- Ligands: MGD.6, 6MO.8, O.9
26 PLIP interactions:26 interactions with chain A- Hydrogen bonds: A:Q.41, A:A.185, A:K.190, A:T.191, A:I.220, A:I.220, A:N.221, A:Q.241, A:W.322, A:S.323, A:S.323, A:R.326, A:H.643, A:H.643, A:H.649, A:H.649, A:Q.755
- Water bridges: A:T.191, A:T.191, A:D.243
- Salt bridges: A:K.190, A:D.243, A:R.326, A:H.359, A:H.643, A:H.643
- 1 x 6MO: MOLYBDENUM(VI) ION(Non-covalent)
- 2 x O: OXYGEN ATOM(Non-covalent)
O.9: 8 residues within 4Å:- Chain A: Y.114, W.116, S.147
- Ligands: MGD.6, MGD.7, 6MO.8, O.10, EPE.11
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.114, A:W.116
O.10: 8 residues within 4Å:- Chain A: Y.114, D.145, Y.146, S.147
- Ligands: MGD.6, 6MO.8, O.9, EPE.11
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.114, A:Y.146, A:S.147
- 1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Li, H.K. et al., The 1.3 A Crystal Structure of Rhodobacter sphaeroides Dimethylsulfoxide Reductase Reveals Two Distinct Molybdenum Coordination Environments. J.Am.Chem.Soc. (2000)
- Release Date
- 2000-08-02
- Peptides
- DIMETHYL SULFOXIDE REDUCTASE: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.30 Å
- Oligo State
- monomer
- Ligands
- 3 x GLC: alpha-D-glucopyranose(Non-covalent)
- 1 x SO4: SULFATE ION(Non-functional Binders)
- 1 x CD: CADMIUM ION(Non-covalent)
- 2 x MGD: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE(Non-covalent)
- 1 x 6MO: MOLYBDENUM(VI) ION(Non-covalent)
- 2 x O: OXYGEN ATOM(Non-covalent)
- 1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Li, H.K. et al., The 1.3 A Crystal Structure of Rhodobacter sphaeroides Dimethylsulfoxide Reductase Reveals Two Distinct Molybdenum Coordination Environments. J.Am.Chem.Soc. (2000)
- Release Date
- 2000-08-02
- Peptides
- DIMETHYL SULFOXIDE REDUCTASE: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A