SMTL ID : 1ev1.3 (3 other biounits)

ECHOVIRUS 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.55 Å

Oligo State

hetero-6-6-6-6-mer

Ligands

6 x PLM: PALMITIC ACID(Non-covalent)

PLM.1: 18 residues within 4Å: Chain A: I.95, T.97, R.98, F.115, I.119, I.144, Y.146, P.168, I.170, M.181, I.183, I.186, Y.192, N.194, N.214, M.216, L.219 Chain C: A.24 14 PLIP interactions: 13 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:I.95, A:F.115, A:Y.146, A:Y.146, A:Y.146, A:P.168, A:I.170, A:I.186, A:L.219, C:A.24 Hydrogen bonds: A:T.97, A:N.194, A:N.214 Salt bridges: A:R.98 PLM.3: 18 residues within 4Å: Chain E: I.95, T.97, R.98, F.115, I.119, I.144, Y.146, P.168, I.170, M.181, I.183, I.186, Y.192, N.194, N.214, M.216, L.219 Chain G: A.24 14 PLIP interactions: 13 interactions with chain E, 1 interactions with chain G Hydrophobic interactions: E:I.95, E:F.115, E:Y.146, E:Y.146, E:Y.146, E:P.168, E:I.170, E:I.186, E:L.219, G:A.24 Hydrogen bonds: E:T.97, E:N.194, E:N.214 Salt bridges: E:R.98 PLM.5: 18 residues within 4Å: Chain I: I.95, T.97, R.98, F.115, I.119, I.144, Y.146, P.168, I.170, M.181, I.183, I.186, Y.192, N.194, N.214, M.216, L.219 Chain K: A.24 14 PLIP interactions: 13 interactions with chain I, 1 interactions with chain K Hydrophobic interactions: I:I.95, I:F.115, I:Y.146, I:Y.146, I:Y.146, I:P.168, I:I.170, I:I.186, I:L.219, K:A.24 Hydrogen bonds: I:T.97, I:N.194, I:N.214 Salt bridges: I:R.98 PLM.7: 18 residues within 4Å: Chain M: I.95, T.97, R.98, F.115, I.119, I.144, Y.146, P.168, I.170, M.181, I.183, I.186, Y.192, N.194, N.214, M.216, L.219 Chain O: A.24 14 PLIP interactions: 13 interactions with chain M, 1 interactions with chain O Hydrophobic interactions: M:I.95, M:F.115, M:Y.146, M:Y.146, M:Y.146, M:P.168, M:I.170, M:I.186, M:L.219, O:A.24 Hydrogen bonds: M:T.97, M:N.194, M:N.214 Salt bridges: M:R.98 PLM.9: 18 residues within 4Å: Chain Q: I.95, T.97, R.98, F.115, I.119, I.144, Y.146, P.168, I.170, M.181, I.183, I.186, Y.192, N.194, N.214, M.216, L.219 Chain S: A.24 13 PLIP interactions: 12 interactions with chain Q, 1 interactions with chain S Hydrophobic interactions: Q:I.95, Q:F.115, Q:Y.146, Q:Y.146, Q:Y.146, Q:P.168, Q:I.170, Q:I.186, Q:L.219, S:A.24 Hydrogen bonds: Q:N.194, Q:N.214 Salt bridges: Q:R.98 PLM.11: 18 residues within 4Å: Chain U: I.95, T.97, R.98, F.115, I.119, I.144, Y.146, P.168, I.170, M.181, I.183, I.186, Y.192, N.194, N.214, M.216, L.219 Chain W: A.24 13 PLIP interactions: 12 interactions with chain U, 1 interactions with chain W Hydrophobic interactions: U:I.95, U:F.115, U:Y.146, U:Y.146, U:Y.146, U:P.168, U:I.170, U:I.186, U:L.219, W:A.24 Hydrogen bonds: U:N.194, U:N.214 Salt bridges: U:R.98

6 x MYR: MYRISTIC ACID(Covalent)

MYR.2: 10 residues within 4Å: Chain D: G.1, A.2, I.29, Y.31 Chain H: A.2, V.4, T.27, I.29, Y.31 Ligands: MYR.4 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain H Hydrophobic interactions: D:Y.31, H:A.2 Hydrogen bonds: H:T.27 MYR.4: 5 residues within 4Å: Chain H: G.1, A.2, I.29, Y.31 Ligands: MYR.2 2 PLIP interactions: 2 interactions with chain H Hydrophobic interactions: H:I.29, H:Y.31 MYR.6: 5 residues within 4Å: Chain L: G.1, A.2, I.29, Y.31 Ligands: MYR.8 2 PLIP interactions: 2 interactions with chain L Hydrophobic interactions: L:I.29, L:Y.31 MYR.8: 10 residues within 4Å: Chain L: A.2, V.4, T.27, I.29, Y.31 Chain P: G.1, A.2, I.29, Y.31 Ligands: MYR.6 3 PLIP interactions: 1 interactions with chain P, 2 interactions with chain L Hydrophobic interactions: P:Y.31, L:A.2 Hydrogen bonds: L:T.27 MYR.10: 10 residues within 4Å: Chain T: G.1, A.2, I.29, Y.31 Chain X: A.2, V.4, T.27, I.29, Y.31 Ligands: MYR.12 3 PLIP interactions: 1 interactions with chain T, 2 interactions with chain X Hydrophobic interactions: T:Y.31, X:A.2 Hydrogen bonds: X:T.27 MYR.12: 5 residues within 4Å: Chain X: G.1, A.2, I.29, Y.31 Ligands: MYR.10 2 PLIP interactions: 2 interactions with chain X Hydrophobic interactions: X:I.29, X:Y.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Filman, D.J. et al., Structure determination of echovirus 1. Acta Crystallogr.,Sect.D (1998)

Release Date

1999-01-27

Peptides

ECHOVIRUS 1: AEIMQU
ECHOVIRUS 1: BFJNRV
ECHOVIRUS 1: CGKOSW
ECHOVIRUS 1: DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

E
1

I
1

M
1

Q
1

U
1

B
2

F
2

J
2

N
2

R
2

V
2

C
3

G
3

K
3

O
3

S
3

W
3

D
4

H
4

L
4

P
4

T
4

X
4

ECHOVIRUS 1

ECHOVIRUS 1

ECHOVIRUS 1

ECHOVIRUS 1

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