SMTL ID : 1evi.1

THREE-DIMENSIONAL STRUCTURE OF THE PURPLE INTERMEDIATE OF PORCINE KIDNEY D-AMINO ACID OXIDASE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 37 residues within 4Å: Chain A: G.7, A.8, G.9, V.10, I.11, Y.35, A.36, D.37, R.38, T.43, T.44, T.45, A.48, A.49, G.50, L.51, R.162, K.163, V.164, C.181, T.182, G.183, W.185, L.189, I.202, Y.228, G.281, R.283, P.284, H.311, G.312, G.313, Y.314, G.315, L.316, T.317 Ligands: 2PC.2 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:I.202, A:R.283 Hydrogen bonds: A:A.8, A:I.11, A:D.37, A:R.38, A:R.38, A:R.38, A:T.44, A:T.44, A:T.44, A:T.44, A:T.45, A:A.49, A:G.50, A:L.51, A:L.51, A:V.164, A:V.164, A:G.312, A:G.315, A:L.316, A:T.317, A:T.317 Water bridges: A:G.9, A:G.12, A:K.163, A:G.183, A:V.184, A:V.184 pi-Cation interactions: A:R.38 FAD.3: 36 residues within 4Å: Chain B: I.6, G.7, A.8, G.9, V.10, I.11, Y.35, A.36, D.37, R.38, T.43, T.44, T.45, A.48, A.49, G.50, L.51, R.162, K.163, V.164, C.181, T.182, G.183, W.185, L.189, G.200, I.202, G.281, R.283, G.312, G.313, Y.314, G.315, L.316, T.317 Ligands: 2PC.4 35 PLIP interactions: 35 interactions with chain B Hydrophobic interactions: B:T.44, B:I.202, B:R.283 Hydrogen bonds: B:A.8, B:I.11, B:G.12, B:D.37, B:D.37, B:R.38, B:R.38, B:T.44, B:T.44, B:T.44, B:T.45, B:T.45, B:A.49, B:G.50, B:L.51, B:L.51, B:V.164, B:V.164, B:G.312, B:G.315, B:L.316, B:T.317 Water bridges: B:G.9, B:G.9, B:T.44, B:K.163, B:K.163, B:K.163, B:K.163, B:G.183 pi-Cation interactions: B:R.38, B:R.283

2 x 2PC: 3,4-DIHYDRO-2H-PYRROLIUM-5-CARBOXYLATE(Non-covalent)

2PC.2: 8 residues within 4Å: Chain A: L.51, Q.53, Y.224, Y.228, I.230, R.283, G.313 Ligands: FAD.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.224, A:Y.228, A:I.230 Hydrogen bonds: A:Y.228 Water bridges: A:Y.224 Salt bridges: A:R.283 2PC.4: 6 residues within 4Å: Chain B: Q.53, Y.224, Y.228, R.283, G.313 Ligands: FAD.3 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Y.224, B:Y.228 Salt bridges: B:R.283

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mizutani, H. et al., Three-dimensional structure of the purple intermediate of porcine kidney D-amino acid oxidase. Optimization of the oxidative half-reaction through alignment of the product with reduced flavin. J.Biochem.(Tokyo) (2000)

Release Date

2000-10-23

Peptides

D-AMINO ACID OXIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D-AMINO ACID OXIDASE

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