SMTL ID : 1ex0.1

HUMAN FACTOR XIII, MUTANT W279F ZYMOGEN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: N.436, S.437, D.438, A.457 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:N.436, A:D.438, A:A.457, H2O.7, H2O.12 CA.6: 4 residues within 4Å: Chain B: N.436, S.437, D.438, A.457 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.438, B:A.457, H2O.25, H2O.29, H2O.35

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 5 residues within 4Å: Chain A: D.456, T.458, H.459, K.462, K.621 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:T.458, A:T.458, A:T.458 Water bridges: A:D.456, A:K.621, A:Q.622, A:K.623 Salt bridges: A:H.459, A:K.462, A:K.621, A:K.623 PO4.7: 5 residues within 4Å: Chain B: D.456, T.458, H.459, K.462, K.621 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:T.458 Water bridges: B:D.456, B:D.456, B:H.459, B:K.621, B:K.621, B:K.621, B:K.623, B:K.623 Salt bridges: B:H.459, B:K.462, B:K.621 PO4.8: 4 residues within 4Å: Chain B: N.517, S.543, H.544, N.545 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.517, B:H.544, B:N.545 Salt bridges: B:H.544

6 x PGO: S-1,2-PROPANEDIOL(Non-covalent)

PGO.3: 7 residues within 4Å: Chain A: R.260, D.404, Y.407, R.408 Chain B: R.260, D.404, R.408 8 PLIP interactions: 4 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:Y.407 Hydrogen bonds: A:R.260, A:R.408, A:R.408, B:R.260, B:D.404, B:R.408, B:R.408 PGO.4: 6 residues within 4Å: Chain A: Q.85, M.136, E.138, S.141, V.142, R.143 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.143 Hydrogen bonds: A:R.143 Water bridges: A:Q.85 PGO.5: 5 residues within 4Å: Chain A: H.421, C.423, Y.500 Chain B: P.386, F.424 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.500, A:Y.500 Water bridges: A:H.421 PGO.9: 3 residues within 4Å: Chain B: E.525, D.532, K.534 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:E.525, B:D.532, B:K.534 Water bridges: B:D.532, B:D.532, B:K.534 PGO.10: 3 residues within 4Å: Chain B: K.565, G.596, Q.597 No protein-ligand interaction detected (PLIP) PGO.11: 6 residues within 4Å: Chain B: E.571, T.572, F.573, E.585, A.586, V.587 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.573 Hydrogen bonds: B:E.571, B:A.586 Water bridges: B:A.586, B:L.588

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garzon, R.J. et al., Tryptophan 279 is Essential for the Transglutaminase Activity of Coagulation Factor XIII: Functional and Structural Characterization. To be Published

Release Date

2003-12-23

Peptides

COAGULATION FACTOR XIII A CHAIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

COAGULATION FACTOR XIII A CHAIN