- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.25 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x ALA- ALA- PHE- ARG- ALA- ALA: R-PHYCOERYTHRIN(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 3 residues within 4Å:- Chain A: G.64, Y.65, N.68
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.68
- Water bridges: A:G.64, A:N.68
SO4.6: 3 residues within 4Å:- Chain B: G.100, E.164, Y.168
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Y.168
- Water bridges: B:E.164
- 1 x BLA: BILIVERDINE IX ALPHA(Covalent)
BLA.4: 18 residues within 4Å:- Chain A: C.59, F.60, A.72, G.73, K.78, K.81, C.82, R.84, D.85, H.88, Y.89, W.108, Y.117, L.120, L.122, P.123, A.126, Y.127
17 PLIP interactions:17 interactions with chain A- Hydrophobic interactions: A:K.78, A:K.81, A:K.81, A:H.88, A:Y.89, A:L.120
- Hydrogen bonds: A:A.72, A:R.84, A:D.85, A:H.88, A:Y.127
- Water bridges: A:E.71, A:K.78
- Salt bridges: A:K.78, A:K.81, A:R.84
- pi-Cation interactions: A:R.84
- 7 x CYC: PHYCOCYANOBILIN(Covalent)
CYC.5: 11 residues within 4Å:- Chain A: K.43, L.44, N.47, V.51, E.54, R.137, L.138, C.139, R.142, D.143, Y.152
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:L.44, A:R.137, A:L.138, A:Y.152, A:Y.152
- Hydrogen bonds: A:N.47, A:R.142, A:R.142
- Salt bridges: A:R.137, A:R.142
CYC.8: 20 residues within 4Å:- Chain B: M.59, L.66, N.72, C.73, R.77, R.78, A.81, C.82, R.84, D.85, I.88, R.108, L.113, Y.117, L.120, V.122, P.123, S.126, T.127
- Ligands: ALA-ALA-PHE-ARG-ALA-ALA.1
13 PLIP interactions:13 interactions with chain B- Hydrophobic interactions: B:R.78, B:A.81, B:D.85, B:I.88, B:L.113, B:L.120, B:V.122, B:V.122
- Hydrogen bonds: B:R.84, B:D.85
- Salt bridges: B:R.77, B:R.78, B:R.84
CYC.9: 20 residues within 4Å:- Chain A: L.24, Q.28
- Chain B: S.32, D.33, N.35, K.36, L.38, D.39, A.40, Y.43, I.142, S.143, N.144, V.153, I.154, E.155, G.156, C.158
- Chain C: R.33, Q.147
20 PLIP interactions:16 interactions with chain B, 2 interactions with chain C, 2 interactions with chain A- Hydrophobic interactions: B:K.36, B:K.36, B:K.36, B:L.38, B:L.38, B:A.40, B:N.144, B:V.153, B:I.154, C:Q.147, A:L.24
- Hydrogen bonds: B:D.33, B:N.35, B:K.36, B:D.39, B:I.154, B:G.156, C:Q.147, A:Q.28
- Salt bridges: B:K.36
CYC.10: 18 residues within 4Å:- Chain C: C.59, F.60, A.72, G.73, K.78, K.81, C.82, R.84, D.85, H.88, Y.89, W.108, Y.117, L.120, L.122, P.123, A.126, Y.127
15 PLIP interactions:15 interactions with chain C- Hydrophobic interactions: C:K.78, C:K.81, C:H.88, C:Y.89, C:L.120, C:L.122
- Hydrogen bonds: C:A.72, C:R.84, C:D.85
- Water bridges: C:K.78, C:K.78
- Salt bridges: C:K.78, C:K.81, C:K.81, C:R.84
CYC.11: 12 residues within 4Å:- Chain C: K.43, L.44, N.47, A.50, V.51, E.54, R.137, L.138, C.139, R.142, D.143, Y.152
14 PLIP interactions:14 interactions with chain C- Hydrophobic interactions: C:L.44, C:A.50, C:V.51, C:R.137, C:L.138, C:D.143, C:Y.152, C:Y.152
- Hydrogen bonds: C:N.47, C:R.137, C:R.137, C:R.142
- Salt bridges: C:R.137, C:R.142
CYC.13: 21 residues within 4Å:- Chain D: M.59, L.66, N.72, C.73, R.77, R.78, A.81, C.82, R.84, D.85, I.88, R.108, C.109, L.113, Y.117, L.120, V.122, P.123, S.126, T.127
- Ligands: ALA-PHE-ARG-ALA-ALA.2
14 PLIP interactions:14 interactions with chain D- Hydrophobic interactions: D:R.78, D:A.81, D:D.85, D:I.88, D:L.113, D:L.120, D:V.122, D:V.122
- Hydrogen bonds: D:R.78, D:R.84, D:R.84, D:D.85
- Salt bridges: D:R.77, D:R.84
CYC.14: 18 residues within 4Å:- Chain A: R.33, Q.147
- Chain C: L.24, Q.28
- Chain D: S.32, N.35, K.36, L.38, D.39, Y.43, I.142, S.143, N.144, V.153, I.154, E.155, G.156, C.158
16 PLIP interactions:13 interactions with chain D, 1 interactions with chain A, 2 interactions with chain C- Hydrophobic interactions: D:K.36, D:L.38, D:L.38, D:N.144, D:V.153, D:V.153, D:I.154, D:I.154, A:Q.147, C:L.24
- Hydrogen bonds: D:N.35, D:D.39, D:D.39, D:I.154, D:G.156, C:Q.28
- 2 x PUB: PHYCOUROBILIN(Covalent)
PUB.7: 15 residues within 4Å:- Chain B: C.50, D.54, G.58, C.61, E.62, R.129, S.132, I.133, A.136, A.137, A.140, F.141, S.147, Q.148, R.149
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:D.54, B:I.133, B:I.133, B:A.136, B:A.137, B:F.141, B:Q.148
- Hydrogen bonds: B:D.54, B:S.147, B:S.147, B:S.147, B:Q.148, B:R.149
- Salt bridges: B:R.129
PUB.12: 17 residues within 4Å:- Chain D: C.50, D.54, G.58, C.61, E.62, R.129, S.132, I.133, A.136, A.137, A.140, F.141, T.145, A.146, S.147, Q.148, R.149
15 PLIP interactions:15 interactions with chain D- Hydrophobic interactions: D:D.54, D:I.133, D:I.133, D:A.136, D:A.137, D:A.140, D:Q.148
- Hydrogen bonds: D:D.54, D:S.147, D:S.147, D:S.147, D:Q.148, D:R.149
- Water bridges: D:A.136
- Salt bridges: D:R.129
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Contreras-Martel, C. et al., Crystallization and 2.2 A resolution structure of R-phycoerythrin from Gracilaria chilensis: a case of perfect hemihedral twinning. Acta Crystallogr.,Sect.D (2001)
- Release Date
- 2000-11-22
- Peptides
- R-PHYCOERYTHRIN: AC
R-PHYCOERYTHRIN: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
KB
BD
L
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.25 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x ALA- ALA- PHE- ARG- ALA- ALA: R-PHYCOERYTHRIN(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 1 x BLA: BILIVERDINE IX ALPHA(Covalent)
- 7 x CYC: PHYCOCYANOBILIN(Covalent)
- 2 x PUB: PHYCOUROBILIN(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Contreras-Martel, C. et al., Crystallization and 2.2 A resolution structure of R-phycoerythrin from Gracilaria chilensis: a case of perfect hemihedral twinning. Acta Crystallogr.,Sect.D (2001)
- Release Date
- 2000-11-22
- Peptides
- R-PHYCOERYTHRIN: AC
R-PHYCOERYTHRIN: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
KB
BD
L