SMTL ID : 1f0l.2 (1 other biounit)

1.55 ANGSTROM CRYSTAL STRUCTURE OF WILD TYPE DIPHTHERIA TOXIN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: A.141, E.142, H.449, S.451, N.486 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: H.391, K.516, S.525, K.526 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: P.225, N.228 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: L.163, I.165, N.166 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: K.24, Y.65 Ligands: APU.6 Ligand excluded by PLIP

1 x APU: ADENYLYL-3'-5'-PHOSPHO-URIDINE-3'-MONOPHOSPHATE(Non-covalent)

APU.6: 19 residues within 4Å: Chain A: H.21, G.22, K.24, Y.27, I.31, G.34, I.35, Q.36, P.38, T.42, G.44, N.45, F.53, Y.54, Y.65, W.153, S.446, R.458 Ligands: CL.5 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:Y.65 Hydrogen bonds: A:G.22, A:G.22, A:G.34, A:Q.36, A:T.42, A:G.44, A:G.44 Water bridges: A:G.52, A:Y.54, A:Y.65, A:E.148, A:R.458, A:R.458, A:R.458 Salt bridges: A:K.24, A:R.458 pi-Stacking: A:Y.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Steere, B., Characterization of High-Order Oligomerization and Energetics in Diphtheria Toxin. Thesis (2001)

Release Date

2000-11-16

Peptides

DIPHTHERIA TOXIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DIPHTHERIA TOXIN

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