SMTL ID : 1f1v.1

ANAEROBIC SUBSTRATE COMPLEX OF HOMOPROTOCATECHUATE 2,3-DIOXYGENASE FROM ARTHROBACTER GLOBIFORMIS. (COMPLEX WITH 3,4-DIHYDROXYPHENYLACETATE)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: H.155, H.200, H.214, Y.257, E.267 Ligands: DHY.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.155, A:H.214, A:E.267, H2O.7 MN.3: 6 residues within 4Å: Chain B: H.155, H.200, H.214, Y.257, E.267 Ligands: DHY.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.155, B:H.214, B:E.267, H2O.13 MN.5: 6 residues within 4Å: Chain C: H.155, H.200, H.214, Y.257, E.267 Ligands: DHY.6 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.155, C:H.214, C:E.267, H2O.19 MN.7: 6 residues within 4Å: Chain D: H.155, H.200, H.214, Y.257, E.267 Ligands: DHY.8 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.155, D:H.214, D:E.267, H2O.25

4 x DHY: 2-(3,4-DIHYDROXYPHENYL)ACETIC ACID(Non-covalent)

DHY.2: 15 residues within 4Å: Chain A: H.155, N.157, W.192, H.200, H.214, R.243, H.248, V.250, S.251, Y.257, E.267, Y.269, R.293, W.304 Ligands: MN.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.192, A:H.248 Hydrogen bonds: A:N.157, A:R.293 Salt bridges: A:R.243, A:H.248, A:R.293 pi-Stacking: A:H.248 DHY.4: 15 residues within 4Å: Chain B: H.155, N.157, W.192, H.200, H.214, R.243, H.248, V.250, S.251, Y.257, E.267, Y.269, R.293, W.304 Ligands: MN.3 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:W.192, B:H.248 Hydrogen bonds: B:N.157, B:R.293 Salt bridges: B:R.243, B:H.248, B:R.293 pi-Stacking: B:H.248 DHY.6: 15 residues within 4Å: Chain C: H.155, N.157, W.192, H.200, H.214, R.243, H.248, V.250, S.251, Y.257, E.267, Y.269, R.293, W.304 Ligands: MN.5 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:W.192, C:H.248 Hydrogen bonds: C:N.157, C:Y.257, C:R.293 Salt bridges: C:R.243, C:H.248, C:R.293 pi-Stacking: C:H.248 DHY.8: 15 residues within 4Å: Chain D: H.155, N.157, W.192, H.200, H.214, R.243, H.248, V.250, S.251, Y.257, E.267, Y.269, R.293, W.304 Ligands: MN.7 9 PLIP interactions: 9 interactions with chain D Hydrophobic interactions: D:W.192, D:H.248 Hydrogen bonds: D:N.157, D:Y.257, D:R.293 Salt bridges: D:R.243, D:H.248, D:R.293 pi-Stacking: D:H.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vetting, M.W. et al., Crystallographic comparison of manganese- and iron-dependent homoprotocatechuate 2,3-dioxygenases. J.Bacteriol. (2004)

Release Date

2003-06-10

Peptides

HOMOPROTOCATECHUATE 2,3-DIOXYGENASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

HOMOPROTOCATECHUATE 2,3-DIOXYGENASE

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