SMTL ID : 1f2u.1

Crystal Structure of RAD50 ABC-ATPase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-oligomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: S.37, Q.140 Chain B: D.88 Ligands: ATP.3 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.37, H2O.12, H2O.103 MG.2: 4 residues within 4Å: Chain C: S.37, Q.140 Chain D: D.88 Ligands: ATP.4 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:S.37, H2O.203, H2O.307

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.3: 24 residues within 4Å: Chain A: R.12, S.13, Q.31, N.32, G.33, S.34, G.35, K.36, S.37, S.38, E.60, T.62, K.63, V.64, Q.140 Chain B: E.89 Chain D: K.29, Y.30, F.57, S.59, G.60, G.61, E.62 Ligands: MG.1 26 PLIP interactions: 18 interactions with chain A, 8 interactions with chain D Hydrogen bonds: A:R.12, A:S.13, A:N.32, A:G.33, A:S.34, A:G.35, A:K.36, A:S.37, A:S.38, A:T.62, A:V.64, A:Q.140, D:K.29, D:Y.30, D:S.59, D:G.60, D:G.61, D:E.62 Water bridges: A:R.12, A:N.32, A:S.37, D:Y.93 Salt bridges: A:R.12, A:K.36, A:K.36 pi-Stacking: D:F.57 ATP.4: 25 residues within 4Å: Chain B: K.29, Y.30, W.48, F.57, S.59, G.60, G.61, E.62 Chain C: R.12, S.13, Q.31, N.32, G.33, S.34, G.35, K.36, S.37, S.38, E.60, T.62, K.63, V.64, Q.140 Chain D: E.89 Ligands: MG.2 30 PLIP interactions: 19 interactions with chain C, 8 interactions with chain B, 3 interactions with chain D Hydrogen bonds: C:R.12, C:N.32, C:G.33, C:S.34, C:G.35, C:K.36, C:S.37, C:S.38, C:T.62, C:V.64, C:Q.140, B:K.29, B:Y.30, B:Y.30, B:S.59, B:G.60, B:G.61 Water bridges: C:R.12, C:S.13, C:S.13, C:S.37, C:K.63, B:Y.93, D:E.89, D:E.89, D:E.89 Salt bridges: C:R.12, C:K.36, C:K.36 pi-Stacking: B:F.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hopfner, K.P. et al., Structural biology of Rad50 ATPase: ATP-driven conformational control in DNA double-strand break repair and the ABC-ATPase superfamily. Cell(Cambridge,Mass.) (2000)

Release Date

2000-08-02

Peptides

RAD50 ABC-ATPASE: AC
RAD50 ABC-ATPASE: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

RAD50 ABC-ATPASE

RAD50 ABC-ATPASE

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