- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x ZN: ZINC ION(Non-covalent)
- 12 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.2: 6 residues within 4Å:- Chain A: A.57, E.167
- Chain D: A.57, E.167
- Chain E: A.57, E.167
6 PLIP interactions:1 interactions with chain A, 2 interactions with chain E, 3 interactions with chain D- Hydrogen bonds: A:E.167, E:E.167, D:E.167, D:E.167
- Water bridges: E:E.167, D:E.167
TRS.3: 3 residues within 4Å:- Chain A: E.64
- Chain D: E.64
- Chain E: E.64
5 PLIP interactions:1 interactions with chain D, 2 interactions with chain A, 2 interactions with chain E- Hydrogen bonds: D:E.64, E:E.64, E:E.64
- Water bridges: A:E.64, A:E.64
TRS.6: 3 residues within 4Å:- Chain C: E.64
- Chain F: E.64
- Chain H: E.64
6 PLIP interactions:1 interactions with chain H, 1 interactions with chain F, 4 interactions with chain C- Hydrogen bonds: H:E.64, F:E.64, C:E.64, C:E.64
- Water bridges: C:E.64, C:E.64
TRS.8: 3 residues within 4Å:- Chain D: D.146
- Chain F: D.146
- Chain G: D.146
5 PLIP interactions:3 interactions with chain G, 1 interactions with chain F, 1 interactions with chain D- Hydrogen bonds: G:D.146, F:D.146, D:D.146
- Water bridges: G:R.153, G:R.153
TRS.10: 4 residues within 4Å:- Chain B: D.146
- Chain C: D.146, R.153
- Chain E: D.146
4 PLIP interactions:1 interactions with chain E, 2 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: E:D.146, B:D.146, B:D.146, C:R.153
TRS.12: 6 residues within 4Å:- Chain C: A.57, E.167
- Chain F: A.57, E.167
- Chain H: A.57, E.167
4 PLIP interactions:2 interactions with chain C, 1 interactions with chain F, 1 interactions with chain H- Hydrogen bonds: C:E.167, C:E.167, F:E.167, H:E.167
TRS.14: 6 residues within 4Å:- Chain G: A.57, E.167
- Chain J: A.57, E.167
- Chain K: A.57, E.167
4 PLIP interactions:1 interactions with chain G, 2 interactions with chain J, 1 interactions with chain K- Hydrogen bonds: G:E.167, J:E.167, J:E.167, K:E.167
TRS.15: 3 residues within 4Å:- Chain G: E.64
- Chain J: E.64
- Chain K: E.64
5 PLIP interactions:1 interactions with chain J, 3 interactions with chain G, 1 interactions with chain K- Hydrogen bonds: J:E.64, G:E.64, K:E.64
- Water bridges: G:E.64, G:E.64
TRS.18: 3 residues within 4Å:- Chain B: E.64
- Chain I: E.64
- Chain L: E.64
6 PLIP interactions:1 interactions with chain B, 3 interactions with chain L, 2 interactions with chain I- Hydrogen bonds: B:E.64, L:E.64, I:E.64, I:E.64
- Water bridges: L:E.64, L:E.64
TRS.20: 3 residues within 4Å:- Chain A: D.146
- Chain J: D.146
- Chain L: D.146
5 PLIP interactions:1 interactions with chain L, 1 interactions with chain J, 3 interactions with chain A- Hydrogen bonds: L:D.146, J:D.146, A:D.146
- Water bridges: A:R.153, A:R.153
TRS.22: 4 residues within 4Å:- Chain H: D.146
- Chain I: D.146, R.153
- Chain K: D.146
4 PLIP interactions:1 interactions with chain I, 2 interactions with chain H, 1 interactions with chain K- Hydrogen bonds: I:R.153, H:D.146, H:D.146, K:D.146
TRS.24: 6 residues within 4Å:- Chain B: A.57, E.167
- Chain I: A.57, E.167
- Chain L: A.57, E.167
5 PLIP interactions:3 interactions with chain I, 1 interactions with chain B, 1 interactions with chain L- Hydrogen bonds: I:E.167, I:E.167, B:E.167, L:E.167
- Water bridges: I:E.167
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Luo, J. et al., The Structural Basis for DNA Protection by E. coli Dps Protein. To be Published
- Release Date
- 2003-06-17
- Peptides
- DNA PROTECTION DURING STARVATION PROTEIN: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
AH
BI
CJ
DK
EL
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x ZN: ZINC ION(Non-covalent)
- 12 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Luo, J. et al., The Structural Basis for DNA Protection by E. coli Dps Protein. To be Published
- Release Date
- 2003-06-17
- Peptides
- DNA PROTECTION DURING STARVATION PROTEIN: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
AH
BI
CJ
DK
EL
F