SMTL ID : 1f3j.1

HISTOCOMPATIBILITY ANTIGEN I-AG7

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-2-2-2-mer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: R.77, S.78, N.79 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.79 NAG.2: 3 residues within 4Å: Chain A: N.119, E.167, W.169 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.167 Hydrogen bonds: A:E.167 NAG.3: 2 residues within 4Å: Chain B: N.16, Q.19 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.19 NAG.4: 3 residues within 4Å: Chain D: R.77, S.78, N.79 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.79 NAG.5: 3 residues within 4Å: Chain D: N.119, E.167, H.168 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:E.167 Hydrogen bonds: D:E.167 NAG.6: 2 residues within 4Å: Chain E: N.16, Q.19 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:N.16 Hydrogen bonds: E:Q.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Latek, R.R. et al., Structural basis of peptide binding and presentation by the type I diabetes-associated MHC class II molecule of NOD mice. Immunity (2000)

Release Date

2000-09-20

Peptides

H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN: AD
MHC CLASS II NOD: BE
LYSOZYME C: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

B
B

E
E

C
P

F
Q

H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN

MHC CLASS II NOD

LYSOZYME C