SMTL ID : 1f50.1

BACTERIORHODOPSIN-BR STATE OF THE E204Q MUTANT AT 1.7 ANGSTROM RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-trimer

Ligands

39 x LI1: 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL(Non-covalent)(Non-functional Binders)

LI1.1: 8 residues within 4Å: Chain A: I.136, A.139 Chain B: L.54, L.58 Ligands: LI1.2, LI1.8, LI1.21, LI1.27 Ligand excluded by PLIP LI1.2: 9 residues within 4Å: Chain A: Y.127, S.128, F.131, W.134, A.135, L.186, A.192 Ligands: LI1.1, LI1.3 Ligand excluded by PLIP LI1.3: 5 residues within 4Å: Chain A: V.183, L.186, A.192, I.194 Ligands: LI1.2 Ligand excluded by PLIP LI1.4: 2 residues within 4Å: Chain A: I.194 Ligands: LI1.10 Ligand excluded by PLIP LI1.5: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP LI1.6: 6 residues within 4Å: Chain A: A.10, T.13, A.14, L.18, L.57 Ligands: LI1.31 Ligand excluded by PLIP LI1.7: 17 residues within 4Å: Chain A: T.51, M.52, Y.60, W.76, F.84 Chain C: W.76, A.80, L.83, F.84, G.112, I.113, G.116, L.119, V.120, L.123 Ligands: LI1.22, LI1.37 Ligand excluded by PLIP LI1.8: 5 residues within 4Å: Chain A: A.135, T.138, A.139, L.142 Ligands: LI1.1 Ligand excluded by PLIP LI1.9: 1 residues within 4Å: Chain A: F.150 Ligand excluded by PLIP LI1.10: 10 residues within 4Å: Chain A: F.149, K.168, R.171, N.172, V.175, V.176, S.179, A.180, V.183 Ligands: LI1.4 Ligand excluded by PLIP LI1.11: 4 residues within 4Å: Chain A: L.21, Y.22, V.25, K.26 Ligand excluded by PLIP LI1.12: 14 residues within 4Å: Chain A: G.17, T.20, L.24, K.36, Y.39, A.40, T.43, L.44, F.50 Chain C: A.106, A.110, I.113, Y.143 Ligands: LI1.31 Ligand excluded by PLIP LI1.13: 7 residues within 4Å: Chain A: L.83, F.84, P.87, L.88, L.91, I.104, V.108 Ligand excluded by PLIP LI1.16: 8 residues within 4Å: Chain B: I.136, A.139 Chain C: L.54, L.58 Ligands: LI1.17, LI1.23, LI1.36, LI1.42 Ligand excluded by PLIP LI1.17: 9 residues within 4Å: Chain B: Y.127, S.128, F.131, W.134, A.135, L.186, A.192 Ligands: LI1.16, LI1.18 Ligand excluded by PLIP LI1.18: 5 residues within 4Å: Chain B: V.183, L.186, A.192, I.194 Ligands: LI1.17 Ligand excluded by PLIP LI1.19: 2 residues within 4Å: Chain B: I.194 Ligands: LI1.25 Ligand excluded by PLIP LI1.20: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP LI1.21: 6 residues within 4Å: Chain B: A.10, T.13, A.14, L.18, L.57 Ligands: LI1.1 Ligand excluded by PLIP LI1.22: 17 residues within 4Å: Chain A: W.76, A.80, L.83, F.84, G.112, I.113, G.116, L.119, V.120, L.123 Chain B: T.51, M.52, Y.60, W.76, F.84 Ligands: LI1.7, LI1.37 Ligand excluded by PLIP LI1.23: 5 residues within 4Å: Chain B: A.135, T.138, A.139, L.142 Ligands: LI1.16 Ligand excluded by PLIP LI1.24: 1 residues within 4Å: Chain B: F.150 Ligand excluded by PLIP LI1.25: 10 residues within 4Å: Chain B: F.149, K.168, R.171, N.172, V.175, V.176, S.179, A.180, V.183 Ligands: LI1.19 Ligand excluded by PLIP LI1.26: 4 residues within 4Å: Chain B: L.21, Y.22, V.25, K.26 Ligand excluded by PLIP LI1.27: 14 residues within 4Å: Chain A: A.106, A.110, I.113, Y.143 Chain B: G.17, T.20, L.24, K.36, Y.39, A.40, T.43, L.44, F.50 Ligands: LI1.1 Ligand excluded by PLIP LI1.28: 7 residues within 4Å: Chain B: L.83, F.84, P.87, L.88, L.91, I.104, V.108 Ligand excluded by PLIP LI1.31: 8 residues within 4Å: Chain A: L.54, L.58 Chain C: I.136, A.139 Ligands: LI1.6, LI1.12, LI1.32, LI1.38 Ligand excluded by PLIP LI1.32: 9 residues within 4Å: Chain C: Y.127, S.128, F.131, W.134, A.135, L.186, A.192 Ligands: LI1.31, LI1.33 Ligand excluded by PLIP LI1.33: 5 residues within 4Å: Chain C: V.183, L.186, A.192, I.194 Ligands: LI1.32 Ligand excluded by PLIP LI1.34: 2 residues within 4Å: Chain C: I.194 Ligands: LI1.40 Ligand excluded by PLIP LI1.35: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP LI1.36: 6 residues within 4Å: Chain C: A.10, T.13, A.14, L.18, L.57 Ligands: LI1.16 Ligand excluded by PLIP LI1.37: 17 residues within 4Å: Chain B: W.76, A.80, L.83, F.84, G.112, I.113, G.116, L.119, V.120, L.123 Chain C: T.51, M.52, Y.60, W.76, F.84 Ligands: LI1.7, LI1.22 Ligand excluded by PLIP LI1.38: 5 residues within 4Å: Chain C: A.135, T.138, A.139, L.142 Ligands: LI1.31 Ligand excluded by PLIP LI1.39: 1 residues within 4Å: Chain C: F.150 Ligand excluded by PLIP LI1.40: 10 residues within 4Å: Chain C: F.149, K.168, R.171, N.172, V.175, V.176, S.179, A.180, V.183 Ligands: LI1.34 Ligand excluded by PLIP LI1.41: 4 residues within 4Å: Chain C: L.21, Y.22, V.25, K.26 Ligand excluded by PLIP LI1.42: 14 residues within 4Å: Chain B: A.106, A.110, I.113, Y.143 Chain C: G.17, T.20, L.24, K.36, Y.39, A.40, T.43, L.44, F.50 Ligands: LI1.16 Ligand excluded by PLIP LI1.43: 7 residues within 4Å: Chain C: L.83, F.84, P.87, L.88, L.91, I.104, V.108 Ligand excluded by PLIP

3 x SQU: 2,10,23-TRIMETHYL-TETRACOSANE(Non-covalent)

SQU.14: 9 residues within 4Å: Chain A: L.11, L.15, L.18, V.209, S.210, V.213, G.214, L.217, R.221 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.11, A:L.15, A:L.18, A:V.209, A:V.213, A:L.217, A:L.217 SQU.29: 9 residues within 4Å: Chain B: L.11, L.15, L.18, V.209, S.210, V.213, G.214, L.217, R.221 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:L.11, B:L.15, B:L.18, B:V.209, B:V.213, B:L.217, B:L.217 SQU.44: 9 residues within 4Å: Chain C: L.11, L.15, L.18, V.209, S.210, V.213, G.214, L.217, R.221 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:L.11, C:L.15, C:L.18, C:V.209, C:V.213, C:L.217, C:L.217

3 x RET: RETINAL(Covalent)

RET.15: 17 residues within 4Å: Chain A: W.82, T.85, T.86, L.89, M.114, G.118, W.134, S.137, T.138, M.141, W.178, Y.181, P.182, W.185, D.208, A.211, K.212 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:T.86, A:M.141, A:W.178, A:W.178, A:Y.181, A:Y.181, A:Y.181, A:P.182, A:W.185, A:A.211, A:K.212 RET.30: 17 residues within 4Å: Chain B: W.82, T.85, T.86, L.89, M.114, G.118, W.134, S.137, T.138, M.141, W.178, Y.181, P.182, W.185, D.208, A.211, K.212 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:T.86, B:M.141, B:W.178, B:W.178, B:Y.181, B:Y.181, B:Y.181, B:P.182, B:W.185, B:A.211, B:K.212 RET.45: 17 residues within 4Å: Chain C: W.82, T.85, T.86, L.89, M.114, G.118, W.134, S.137, T.138, M.141, W.178, Y.181, P.182, W.185, D.208, A.211, K.212 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:T.86, C:M.141, C:W.178, C:W.178, C:Y.181, C:Y.181, C:Y.181, C:P.182, C:W.185, C:A.211, C:K.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luecke, H. et al., Coupling photoisomerization of retinal to directional transport in bacteriorhodopsin. J.Mol.Biol. (2000)

Release Date

2000-08-09

Peptides

BACTERIORHODOPSIN: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Membrane

We predict this structure to be a membrane protein.
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BACTERIORHODOPSIN

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