- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.92 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 6 x TBD: 2*-DEOXY-THYMIDINE-5*-ALPHA BORANO DIPHOSPHATE (ISOMER RP)(Non-covalent)
TBD.2: 12 residues within 4Å:- Chain A: K.16, Y.56, H.59, F.64, L.68, R.92, T.98, R.109, V.116, G.117, N.119
- Ligands: MG.1
15 PLIP interactions:15 interactions with chain A- Hydrophobic interactions: A:F.64
- Hydrogen bonds: A:K.16, A:R.109, A:N.119
- Water bridges: A:K.16, A:Y.56, A:R.92, A:R.92, A:R.92, A:R.92, A:R.109, A:H.122
- Salt bridges: A:R.92, A:R.109
- pi-Stacking: A:F.64
TBD.4: 12 residues within 4Å:- Chain B: K.16, Y.56, H.59, F.64, L.68, R.92, T.98, R.109, V.116, G.117, N.119
- Ligands: MG.3
15 PLIP interactions:15 interactions with chain B- Hydrophobic interactions: B:F.64, B:V.116
- Hydrogen bonds: B:K.16, B:R.109, B:N.119
- Water bridges: B:K.16, B:Y.56, B:R.92, B:R.92, B:R.92, B:R.92, B:H.122
- Salt bridges: B:R.92, B:R.109
- pi-Stacking: B:F.64
TBD.6: 12 residues within 4Å:- Chain A: E.155
- Chain C: K.16, H.59, F.64, L.68, R.92, T.98, R.109, V.116, G.117, N.119
- Ligands: MG.5
14 PLIP interactions:14 interactions with chain C- Hydrophobic interactions: C:F.64
- Hydrogen bonds: C:K.16, C:R.109, C:N.119
- Water bridges: C:E.58, C:R.92, C:R.92, C:R.109, C:I.121, C:H.122, C:H.122
- Salt bridges: C:R.92, C:R.109
- pi-Stacking: C:F.64
TBD.8: 12 residues within 4Å:- Chain D: K.16, Y.56, H.59, F.64, L.68, R.92, T.98, R.109, V.116, G.117, N.119
- Ligands: MG.7
16 PLIP interactions:16 interactions with chain D- Hydrophobic interactions: D:F.64
- Hydrogen bonds: D:K.16, D:R.109, D:N.119
- Water bridges: D:K.16, D:R.92, D:R.92, D:R.92, D:R.92, D:T.98, D:T.98, D:T.98, D:T.98
- Salt bridges: D:R.92, D:R.109
- pi-Stacking: D:F.64
TBD.10: 12 residues within 4Å:- Chain E: K.16, Y.56, H.59, F.64, L.68, R.92, T.98, R.109, V.116, G.117, N.119
- Ligands: MG.9
15 PLIP interactions:15 interactions with chain E- Hydrophobic interactions: E:F.64, E:V.116
- Hydrogen bonds: E:K.16, E:R.109, E:N.119
- Water bridges: E:K.16, E:R.92, E:R.92, E:R.92, E:R.92, E:H.122, E:H.122
- Salt bridges: E:R.92, E:R.109
- pi-Stacking: E:F.64
TBD.12: 12 residues within 4Å:- Chain D: E.155
- Chain F: K.16, H.59, F.64, L.68, R.92, T.98, R.109, V.116, G.117, N.119
- Ligands: MG.11
16 PLIP interactions:16 interactions with chain F- Hydrophobic interactions: F:F.64
- Hydrogen bonds: F:K.16, F:R.109, F:N.119
- Water bridges: F:R.92, F:R.92, F:R.109, F:I.121, F:H.122, F:H.122, F:H.122, F:H.122, F:G.123
- Salt bridges: F:R.92, F:R.109
- pi-Stacking: F:F.64
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Meyer, P. et al., Structural basis for activation of alpha-boranophosphate nucleotide analogues targeting drug-resistant reverse transcriptase. EMBO J. (2000)
- Release Date
- 2000-09-13
- Peptides
- PROTEIN (NUCLEOSIDE DIPHOSPHATE KINASE): ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
AE
BF
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.92 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 6 x TBD: 2*-DEOXY-THYMIDINE-5*-ALPHA BORANO DIPHOSPHATE (ISOMER RP)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Meyer, P. et al., Structural basis for activation of alpha-boranophosphate nucleotide analogues targeting drug-resistant reverse transcriptase. EMBO J. (2000)
- Release Date
- 2000-09-13
- Peptides
- PROTEIN (NUCLEOSIDE DIPHOSPHATE KINASE): ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
AE
BF
C