SMTL ID : 1f7l.1

HOLO-(ACYL CARRIER PROTEIN) SYNTHASE IN COMPLEX WITH COENZYME A AT 1.5A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-trimer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: D.8, E.58 Ligands: COA.12 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.8, A:E.58, H2O.1, H2O.1, H2O.1 CA.3: 5 residues within 4Å: Chain A: E.108 Chain B: E.108 Chain C: E.108 Ligands: CA.7, CA.11 5 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: C:E.108, B:E.108, A:E.108, H2O.5, H2O.9 CA.5: 3 residues within 4Å: Chain B: D.8, E.58 Ligands: COA.4 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.8, B:E.58, H2O.4, H2O.4, H2O.5 CA.7: 5 residues within 4Å: Chain A: E.108 Chain B: E.108 Chain C: E.108 Ligands: CA.3, CA.11 5 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: C:E.108, B:E.108, A:E.108, H2O.5, H2O.9 CA.9: 3 residues within 4Å: Chain C: D.8, E.58 Ligands: COA.8 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:D.8, C:E.58, H2O.8, H2O.8, H2O.8 CA.11: 5 residues within 4Å: Chain A: E.108 Chain B: E.108 Chain C: E.108 Ligands: CA.3, CA.7 5 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: C:E.108, B:E.108, A:E.108, H2O.5, H2O.9

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: T.10, E.11, R.14 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain B: T.10, E.11, R.14 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain C: T.10, E.11, R.14 Ligand excluded by PLIP

3 x COA: COENZYME A(Non-covalent)

COA.4: 22 residues within 4Å: Chain A: R.53, N.84, G.85, K.86, P.87, I.103, T.104, H.105 Chain B: D.8, F.25, R.28, I.29, F.54, E.58, S.61, K.62, G.65, T.66, G.67, I.68, F.74 Ligands: CA.5 15 PLIP interactions: 8 interactions with chain B, 7 interactions with chain A Hydrophobic interactions: B:I.68 Hydrogen bonds: B:G.65, B:I.68, B:I.68, A:H.105 Water bridges: B:I.9, B:R.14, B:R.14, A:E.48, A:R.53, A:R.53, A:R.53 Salt bridges: B:K.62, A:R.53, A:H.105 COA.8: 22 residues within 4Å: Chain B: R.53, N.84, G.85, K.86, P.87, I.103, T.104, H.105 Chain C: D.8, F.25, R.28, I.29, F.54, E.58, S.61, K.62, G.65, T.66, G.67, I.68, F.74 Ligands: CA.9 15 PLIP interactions: 7 interactions with chain B, 8 interactions with chain C Hydrogen bonds: B:H.105, C:G.65, C:I.68, C:I.68 Water bridges: B:E.48, B:R.53, B:R.53, B:R.53, C:I.9, C:R.14, C:R.14 Salt bridges: B:R.53, B:H.105, C:K.62 Hydrophobic interactions: C:I.68 COA.12: 22 residues within 4Å: Chain A: D.8, F.25, R.28, I.29, F.54, E.58, S.61, K.62, G.65, T.66, G.67, I.68, F.74 Chain C: R.53, N.84, G.85, K.86, P.87, I.103, T.104, H.105 Ligands: CA.1 15 PLIP interactions: 8 interactions with chain A, 7 interactions with chain C Hydrophobic interactions: A:I.68 Hydrogen bonds: A:G.65, A:I.68, A:I.68, C:H.105 Water bridges: A:I.9, A:R.14, A:R.14, C:E.48, C:R.53, C:R.53, C:R.53 Salt bridges: A:K.62, C:R.53, C:H.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parris, K.D. et al., Crystal structures of substrate binding to Bacillus subtilis holo-(acyl carrier protein) synthase reveal a novel trimeric arrangement of molecules resulting in three active sites. Structure Fold.Des. (2000)

Release Date

2001-06-27

Peptides

HOLO-(ACYL CARRIER PROTEIN) SYNTHASE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

HOLO-(ACYL CARRIER PROTEIN) SYNTHASE