SMTL ID : 1f7t.3 (2 other biounits)

HOLO-(ACYL CARRIER PROTEIN) SYNTHASE AT 1.8A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-hexamer

Ligands

8 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: H.106, T.107 Chain B: I.10 Ligands: CL.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.105 Water bridges: A:T.105 NA.2: 3 residues within 4Å: Chain A: E.28, L.31, Q.76 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.76 NA.8: 3 residues within 4Å: Chain B: V.102 Ligands: CL.10, CL.16 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.102, B:V.102 NA.9: 4 residues within 4Å: Chain B: H.106, T.107 Chain C: I.10 Ligands: CL.14 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.106 NA.13: 4 residues within 4Å: Chain A: I.10 Chain C: H.106, T.107 Ligands: CL.6 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:H.106 NA.20: 3 residues within 4Å: Chain D: H.106 Chain E: I.10 Ligands: CL.30 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:D.9 NA.21: 3 residues within 4Å: Chain D: I.10 Chain F: H.106 Ligands: CL.22 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:T.105 NA.29: 4 residues within 4Å: Chain E: H.106, T.107 Chain F: I.10 Ligands: CL.31 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:I.10

19 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: R.81, K.82 Ligand excluded by PLIP CL.4: 6 residues within 4Å: Chain A: K.87, P.88, S.103, I.104 Chain B: K.63 Ligands: DTT.7 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain A: T.107, K.108, E.109 Chain B: E.12, Y.110 Ligand excluded by PLIP CL.6: 6 residues within 4Å: Chain A: I.10, T.11, E.12, R.15 Chain C: T.107 Ligands: NA.13 Ligand excluded by PLIP CL.10: 6 residues within 4Å: Chain B: P.88, H.101, V.102 Chain D: R.25 Ligands: NA.8, CL.16 Ligand excluded by PLIP CL.11: 6 residues within 4Å: Chain A: T.107 Chain B: I.10, T.11, E.12, R.15 Ligands: NA.1 Ligand excluded by PLIP CL.14: 6 residues within 4Å: Chain B: T.107 Chain C: I.10, T.11, E.12, R.15 Ligands: NA.9 Ligand excluded by PLIP CL.15: 6 residues within 4Å: Chain A: K.63 Chain C: K.87, P.88, S.103, I.104 Ligands: DTT.19 Ligand excluded by PLIP CL.16: 6 residues within 4Å: Chain B: H.101 Chain C: G.5, I.6 Chain D: K.24 Ligands: NA.8, CL.10 Ligand excluded by PLIP CL.17: 1 residues within 4Å: Chain C: R.33 Ligand excluded by PLIP CL.18: 4 residues within 4Å: Chain A: Y.110 Chain C: T.107, K.108, E.109 Ligand excluded by PLIP CL.22: 5 residues within 4Å: Chain D: I.10, T.11, E.12, R.15 Ligands: NA.21 Ligand excluded by PLIP CL.23: 4 residues within 4Å: Chain D: T.107, K.108, E.109 Chain E: Y.110 Ligand excluded by PLIP CL.24: 6 residues within 4Å: Chain D: K.87, P.88, S.103, I.104 Chain E: K.63 Ligands: DTT.27 Ligand excluded by PLIP CL.25: 5 residues within 4Å: Chain D: K.87, H.101, V.102 Chain E: G.5, I.6 Ligand excluded by PLIP CL.30: 6 residues within 4Å: Chain D: T.107 Chain E: I.10, T.11, E.12, R.15 Ligands: NA.20 Ligand excluded by PLIP CL.31: 5 residues within 4Å: Chain F: I.10, T.11, E.12, R.15 Ligands: NA.29 Ligand excluded by PLIP CL.32: 6 residues within 4Å: Chain D: K.63 Chain F: K.87, P.88, S.103, I.104 Ligands: DTT.34 Ligand excluded by PLIP CL.33: 6 residues within 4Å: Chain D: G.5, I.6 Chain F: K.87, H.101, V.102 Ligands: GOL.28 Ligand excluded by PLIP

5 x DTT: 2,3-DIHYDROXY-1,4-DITHIOBUTANE(Non-covalent)

DTT.7: 8 residues within 4Å: Chain A: N.85, G.86, K.87 Chain B: K.63, G.66, T.67, G.68 Ligands: CL.4 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.63 Water bridges: B:K.63 DTT.19: 8 residues within 4Å: Chain A: K.63, G.66, T.67, G.68 Chain C: N.85, G.86, K.87 Ligands: CL.15 No protein-ligand interaction detected (PLIP) DTT.26: 8 residues within 4Å: Chain D: T.32, Q.76, D.77, E.79, R.81, I.91, C.92, T.93 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:E.79, D:R.81 DTT.27: 7 residues within 4Å: Chain D: N.85, G.86, K.87 Chain E: G.66, T.67, G.68 Ligands: CL.24 No protein-ligand interaction detected (PLIP) DTT.34: 8 residues within 4Å: Chain D: K.63, G.66, T.67, G.68 Chain F: N.85, G.86, K.87 Ligands: CL.32 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain D Water bridges: F:I.104, D:K.63

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.12: 7 residues within 4Å: Chain B: T.32, Q.76, D.77, E.79, I.91, C.92, T.93 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Q.76, B:E.79, B:I.91, B:T.93, B:T.93 Water bridges: B:K.94 GOL.28: 8 residues within 4Å: Chain D: Y.4, K.63, A.64, F.65, G.66 Chain F: D.83, K.87 Ligands: CL.33 4 PLIP interactions: 1 interactions with chain D, 3 interactions with chain F Hydrogen bonds: D:Y.4, F:D.83, F:K.87, F:K.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parris, K.D. et al., Crystal structures of substrate binding to Bacillus subtilis holo-(acyl carrier protein) synthase reveal a novel trimeric arrangement of molecules resulting in three active sites. Structure Fold.Des. (2000)

Release Date

2001-06-27

Peptides

HOLO-(ACYL CARRIER PROTEIN) SYNTHASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

HOLO-(ACYL CARRIER PROTEIN) SYNTHASE

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