SMTL ID : 1f8w.1 (1 other biounit)

CRYSTAL STRUCTURE OF NADH PEROXIDASE MUTANT: R303M

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-tetramer

Ligands

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 32 residues within 4Å: Chain A: L.6, G.7, S.9, H.10, G.11, E.32, K.33, S.41, C.42, T.77, E.78, I.79, S.110, P.111, G.112, A.113, M.131, R.132, Y.159, I.160, E.163, N.247, G.280, D.281, A.297, L.298, A.299, T.300, A.302 Chain D: F.424, Q.425, P.426 22 PLIP interactions: 20 interactions with chain A, 2 interactions with chain D Hydrophobic interactions: A:I.160, A:I.160 Hydrogen bonds: A:S.9, A:G.11, A:K.33, A:I.79, A:I.79, A:A.113, A:Y.159, A:D.281, A:A.297, A:A.299, A:T.300, D:F.424, D:Q.425 Water bridges: A:S.9, A:S.9, A:G.112, A:R.132, A:A.302 Salt bridges: A:R.132 pi-Cation interactions: A:K.33 FAD.2: 32 residues within 4Å: Chain B: L.6, G.7, S.9, H.10, G.11, E.32, K.33, S.41, C.42, T.77, E.78, I.79, S.110, P.111, G.112, A.113, M.131, R.132, Y.159, I.160, E.163, N.247, G.280, D.281, A.297, L.298, A.299, T.300, A.302 Chain C: F.424, Q.425, P.426 23 PLIP interactions: 21 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:I.160, B:I.160 Hydrogen bonds: B:S.9, B:G.11, B:K.33, B:I.79, B:I.79, B:A.113, B:D.281, B:A.297, B:A.299, B:T.300, C:F.424, C:Q.425 Water bridges: B:S.9, B:S.9, B:G.112, B:R.132, B:Y.159, B:T.300, B:A.302 Salt bridges: B:R.132 pi-Cation interactions: B:K.33 FAD.3: 32 residues within 4Å: Chain B: F.424, Q.425, P.426 Chain C: L.6, G.7, S.9, H.10, G.11, E.32, K.33, S.41, C.42, T.77, E.78, I.79, S.110, P.111, G.112, A.113, M.131, R.132, Y.159, I.160, E.163, N.247, G.280, D.281, A.297, L.298, A.299, T.300, A.302 22 PLIP interactions: 20 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: C:I.160, C:I.160 Hydrogen bonds: C:S.9, C:G.11, C:K.33, C:I.79, C:I.79, C:A.113, C:Y.159, C:D.281, C:A.297, C:A.299, C:T.300, B:F.424, B:Q.425 Water bridges: C:S.9, C:S.9, C:G.112, C:R.132, C:A.302 Salt bridges: C:R.132 pi-Cation interactions: C:K.33 FAD.4: 32 residues within 4Å: Chain A: F.424, Q.425, P.426 Chain D: L.6, G.7, S.9, H.10, G.11, E.32, K.33, S.41, C.42, T.77, E.78, I.79, S.110, P.111, G.112, A.113, M.131, R.132, Y.159, I.160, E.163, N.247, G.280, D.281, A.297, L.298, A.299, T.300, A.302 23 PLIP interactions: 21 interactions with chain D, 2 interactions with chain A Hydrophobic interactions: D:I.160, D:I.160 Hydrogen bonds: D:S.9, D:G.11, D:K.33, D:I.79, D:I.79, D:A.113, D:D.281, D:A.297, D:A.299, D:T.300, A:F.424, A:Q.425 Water bridges: D:S.9, D:S.9, D:G.112, D:R.132, D:Y.159, D:T.300, D:A.302 Salt bridges: D:R.132 pi-Cation interactions: D:K.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crane III, E.J. et al., Analysis of the kinetic and redox properties of the NADH peroxidase R303M mutant: correlation with the crystal structure. Biochemistry (2000)

Release Date

2001-02-05

Peptides

NADH PEROXIDASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

NADH PEROXIDASE

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