- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- hetero-6-6-mer
- Ligands
- 2 x BLA: BILIVERDINE IX ALPHA(Covalent)
- 10 x CYC: PHYCOCYANOBILIN(Covalent)
CYC.2: 17 residues within 4Å:- Chain B: N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, L.113, L.120, T.122, P.123, S.126, V.127
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:R.78, B:I.88, B:L.113, B:L.120, B:V.127
- Hydrogen bonds: B:N.72, B:R.84, B:D.85
CYC.4: 25 residues within 4Å:- Chain C: V.59, T.66, P.72, N.73, Y.74, S.75, G.80, K.83, C.84, R.86, D.87, Y.90, Y.110, L.111, I.118, F.122, L.124, W.128, Y.129
- Chain F: R.57, I.67, Y.74, T.75, S.76, M.79
21 PLIP interactions:18 interactions with chain C, 3 interactions with chain F- Hydrophobic interactions: C:V.59, C:T.66, C:N.73, C:K.83, C:K.83, C:Y.90, C:L.111, C:F.122, C:W.128, C:Y.129, F:Y.74
- Hydrogen bonds: C:S.75, C:R.86, C:D.87, C:Y.129, F:T.75
- Water bridges: C:K.83, C:K.83
- Salt bridges: C:K.83, C:R.86, F:R.57
CYC.5: 20 residues within 4Å:- Chain D: L.66, N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, C.109, L.113, Y.117, L.120, T.122, P.123, S.126, V.127
10 PLIP interactions:10 interactions with chain D- Hydrophobic interactions: D:R.78, D:A.81, D:I.88, D:L.113, D:T.122, D:V.127
- Hydrogen bonds: D:N.72, D:R.84
- Salt bridges: D:R.77, D:R.84
CYC.7: 26 residues within 4Å:- Chain B: R.57, I.67, T.75, S.76, M.79
- Chain E: V.59, T.66, P.72, N.73, Y.74, S.75, G.80, K.83, C.84, R.86, D.87, Y.90, M.94, Y.110, L.111, L.115, I.118, F.122, L.124, W.128, Y.129
18 PLIP interactions:16 interactions with chain E, 2 interactions with chain B- Hydrophobic interactions: E:V.59, E:T.66, E:N.73, E:K.83, E:Y.90, E:L.111, E:L.115, E:F.122, E:L.124, E:W.128, E:Y.129
- Hydrogen bonds: E:S.75, E:R.86, E:D.87, B:T.75
- Salt bridges: E:K.83, E:R.86, B:R.57
CYC.8: 19 residues within 4Å:- Chain F: L.66, N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, C.109, L.113, Y.117, L.120, T.122, S.126, V.127
12 PLIP interactions:12 interactions with chain F- Hydrophobic interactions: F:R.78, F:A.81, F:I.88, F:I.88, F:L.113, F:L.120, F:T.122, F:V.127
- Hydrogen bonds: F:N.72, F:R.84
- Salt bridges: F:R.77, F:R.84
CYC.11: 17 residues within 4Å:- Chain H: N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, L.113, L.120, T.122, P.123, S.126, V.127
8 PLIP interactions:8 interactions with chain H- Hydrophobic interactions: H:R.78, H:I.88, H:L.113, H:L.120, H:V.127
- Hydrogen bonds: H:N.72, H:R.84, H:D.85
CYC.13: 25 residues within 4Å:- Chain I: V.59, T.66, P.72, N.73, Y.74, S.75, G.80, K.83, C.84, R.86, D.87, Y.90, Y.110, L.111, I.118, F.122, L.124, W.128, Y.129
- Chain L: R.57, I.67, Y.74, T.75, S.76, M.79
20 PLIP interactions:17 interactions with chain I, 3 interactions with chain L- Hydrophobic interactions: I:V.59, I:T.66, I:N.73, I:K.83, I:K.83, I:Y.90, I:L.111, I:F.122, I:W.128, I:Y.129, L:Y.74
- Hydrogen bonds: I:S.75, I:R.86, I:D.87, L:T.75
- Water bridges: I:K.83, I:K.83
- Salt bridges: I:K.83, I:R.86, L:R.57
CYC.14: 20 residues within 4Å:- Chain J: L.66, N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, C.109, L.113, Y.117, L.120, T.122, P.123, S.126, V.127
10 PLIP interactions:10 interactions with chain J- Hydrophobic interactions: J:R.78, J:A.81, J:I.88, J:L.113, J:T.122, J:V.127
- Hydrogen bonds: J:N.72, J:R.84
- Salt bridges: J:R.77, J:R.84
CYC.16: 26 residues within 4Å:- Chain H: R.57, I.67, T.75, S.76, M.79
- Chain K: V.59, T.66, P.72, N.73, Y.74, S.75, G.80, K.83, C.84, R.86, D.87, Y.90, M.94, Y.110, L.111, L.115, I.118, F.122, L.124, W.128, Y.129
19 PLIP interactions:17 interactions with chain K, 2 interactions with chain H- Hydrophobic interactions: K:V.59, K:T.66, K:N.73, K:K.83, K:Y.90, K:L.111, K:L.115, K:F.122, K:L.124, K:W.128, K:Y.129
- Hydrogen bonds: K:S.75, K:R.86, K:D.87, K:Y.129, H:T.75
- Salt bridges: K:K.83, K:R.86, H:R.57
CYC.17: 19 residues within 4Å:- Chain L: L.66, N.72, A.73, R.77, R.78, A.81, C.82, R.84, D.85, M.86, I.88, R.108, C.109, L.113, Y.117, L.120, T.122, S.126, V.127
12 PLIP interactions:12 interactions with chain L- Hydrophobic interactions: L:R.78, L:A.81, L:I.88, L:I.88, L:L.113, L:L.120, L:T.122, L:V.127
- Hydrogen bonds: L:N.72, L:R.84
- Salt bridges: L:R.77, L:R.84
- 6 x PEB: PHYCOERYTHROBILIN(Covalent)
PEB.3: 18 residues within 4Å:- Chain A: N.21, L.24, Q.25, N.28
- Chain B: N.35, K.36, L.38, D.39, V.40, V.142, N.143, T.148, P.149, A.150, G.151, C.153
- Chain G: R.33, D.145
14 PLIP interactions:10 interactions with chain B, 2 interactions with chain A, 2 interactions with chain G- Hydrophobic interactions: B:N.35, B:K.36, B:L.38, B:V.40, B:P.149, B:P.149, A:L.24, A:Q.25
- Hydrogen bonds: B:N.35, B:N.35, B:T.148, B:G.151, G:R.33
- pi-Cation interactions: G:R.33
PEB.6: 19 residues within 4Å:- Chain C: L.24, Q.25, N.28
- Chain D: N.35, K.36, L.38, D.39, V.40, V.142, N.143, D.144, T.148, P.149, A.150, G.151, C.153
- Chain K: R.33, D.145, N.148
11 PLIP interactions:9 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:N.35, D:K.36, D:L.38, D:V.40, D:P.149, C:L.24, C:Q.25
- Hydrogen bonds: D:N.35, D:D.39, D:P.149, D:G.151
PEB.9: 21 residues within 4Å:- Chain E: N.21, L.24, Q.25, N.28
- Chain F: N.35, K.36, L.38, D.39, V.40, V.142, N.143, D.144, T.145, T.148, P.149, A.150, G.151, C.153
- Chain I: R.33, D.145, N.148
18 PLIP interactions:13 interactions with chain F, 3 interactions with chain I, 2 interactions with chain E- Hydrophobic interactions: F:N.35, F:K.36, F:L.38, F:L.38, F:V.40, F:P.149, I:R.33, E:L.24, E:Q.25
- Hydrogen bonds: F:N.35, F:K.36, F:D.39, F:D.39, F:P.149, F:G.151
- Water bridges: F:N.143, I:D.145
- pi-Cation interactions: I:R.33
PEB.12: 18 residues within 4Å:- Chain A: R.33, D.145
- Chain G: N.21, L.24, Q.25, N.28
- Chain H: N.35, K.36, L.38, D.39, V.40, V.142, N.143, T.148, P.149, A.150, G.151, C.153
14 PLIP interactions:10 interactions with chain H, 2 interactions with chain A, 2 interactions with chain G- Hydrophobic interactions: H:N.35, H:K.36, H:L.38, H:V.40, H:P.149, H:P.149, G:L.24, G:Q.25
- Hydrogen bonds: H:N.35, H:N.35, H:D.39, H:G.151, A:R.33
- pi-Cation interactions: A:R.33
PEB.15: 19 residues within 4Å:- Chain E: R.33, D.145, N.148
- Chain I: L.24, Q.25, N.28
- Chain J: N.35, K.36, L.38, D.39, V.40, V.142, N.143, D.144, T.148, P.149, A.150, G.151, C.153
10 PLIP interactions:8 interactions with chain J, 2 interactions with chain I- Hydrophobic interactions: J:N.35, J:K.36, J:L.38, J:V.40, J:P.149, I:L.24, I:Q.25
- Hydrogen bonds: J:N.35, J:P.149, J:G.151
PEB.18: 21 residues within 4Å:- Chain C: R.33, D.145, N.148
- Chain K: N.21, L.24, Q.25, N.28
- Chain L: N.35, K.36, L.38, D.39, V.40, V.142, N.143, D.144, T.145, T.148, P.149, A.150, G.151, C.153
17 PLIP interactions:2 interactions with chain K, 13 interactions with chain L, 2 interactions with chain C- Hydrophobic interactions: K:L.24, K:Q.25, L:N.35, L:K.36, L:L.38, L:L.38, L:V.40, L:P.149, C:R.33
- Hydrogen bonds: L:N.35, L:K.36, L:D.39, L:P.149, L:G.151
- Water bridges: L:N.143, L:T.148
- pi-Cation interactions: C:R.33
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jiang, T. et al., Crystal structure of R-phycocyanin and possible energy transfer pathways in the phycobilisome. Biophys.J. (2001)
- Release Date
- 2001-07-09
- Peptides
- R-PHYCOCYANIN: ACEGIK
R-PHYCOCYANIN: BDFHJL - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
KE
MG
AI
KK
MB
BD
LF
NH
BJ
LL
N
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- hetero-6-6-mer
- Ligands
- 2 x BLA: BILIVERDINE IX ALPHA(Covalent)
- 10 x CYC: PHYCOCYANOBILIN(Covalent)
- 6 x PEB: PHYCOERYTHROBILIN(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jiang, T. et al., Crystal structure of R-phycocyanin and possible energy transfer pathways in the phycobilisome. Biophys.J. (2001)
- Release Date
- 2001-07-09
- Peptides
- R-PHYCOCYANIN: ACEGIK
R-PHYCOCYANIN: BDFHJL - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
KE
MG
AI
KK
MB
BD
LF
NH
BJ
LL
N