SMTL ID : 1f9a.1

CRYSTAL STRUCTURE ANALYSIS OF NMN ADENYLYLTRANSFERASE FROM METHANOCOCCUS JANNASCHII

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

6 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 1 residues within 4Å: Ligands: ATP.7 No protein-ligand interaction detected (PLIP) MG.2: 1 residues within 4Å: Ligands: ATP.10 No protein-ligand interaction detected (PLIP) MG.3: 1 residues within 4Å: Ligands: ATP.9 No protein-ligand interaction detected (PLIP) MG.4: 2 residues within 4Å: Chain B: R.121 Ligands: ATP.8 No protein-ligand interaction detected (PLIP) MG.5: 1 residues within 4Å: Ligands: ATP.12 No protein-ligand interaction detected (PLIP) MG.6: 1 residues within 4Å: Ligands: ATP.11 No protein-ligand interaction detected (PLIP)

6 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.7: 20 residues within 4Å: Chain A: I.5, I.6, G.7, R.8, F.9, H.13, G.15, H.16, V.19, P.116, E.117, M.118, F.119, R.121, Y.124, S.125, G.126, T.127, R.130 Ligands: MG.1 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:R.8, A:F.9, A:Y.96, A:F.119, A:F.119, A:R.121, A:G.126, A:T.127, A:T.127 Water bridges: A:Q.10, A:G.98, A:G.98, A:R.130 Salt bridges: A:R.8, A:H.13, A:H.16, A:H.16, A:R.121, A:R.130 ATP.8: 21 residues within 4Å: Chain B: I.5, I.6, G.7, R.8, F.9, H.13, G.15, H.16, V.19, Y.96, P.116, E.117, M.118, F.119, R.121, Y.124, S.125, G.126, T.127, R.130 Ligands: MG.4 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:I.6, B:R.8, B:F.9, B:F.119, B:F.119, B:R.121, B:G.126, B:T.127, B:T.127 Salt bridges: B:R.8, B:H.13, B:H.16, B:H.16, B:R.121, B:R.130 ATP.9: 20 residues within 4Å: Chain C: I.5, I.6, G.7, R.8, F.9, H.13, G.15, H.16, V.19, P.116, E.117, M.118, F.119, R.121, Y.124, S.125, G.126, T.127, R.130 Ligands: MG.3 18 PLIP interactions: 18 interactions with chain C Hydrogen bonds: C:I.6, C:R.8, C:F.9, C:F.119, C:F.119, C:R.121, C:G.126, C:T.127, C:T.127 Water bridges: C:R.8, C:R.8 Salt bridges: C:R.8, C:H.13, C:H.16, C:H.16, C:R.121, C:R.130 pi-Stacking: C:H.16 ATP.10: 19 residues within 4Å: Chain D: I.5, I.6, G.7, R.8, F.9, H.13, G.15, H.16, P.116, E.117, M.118, F.119, R.121, Y.124, S.125, G.126, T.127, R.130 Ligands: MG.2 18 PLIP interactions: 18 interactions with chain D Hydrogen bonds: D:I.6, D:R.8, D:F.9, D:F.119, D:F.119, D:G.126, D:T.127, D:T.127, D:T.127 Water bridges: D:I.6, D:R.8, D:R.8, D:R.8 Salt bridges: D:R.8, D:H.16, D:H.16, D:R.121, D:R.130 ATP.11: 20 residues within 4Å: Chain E: I.5, I.6, G.7, R.8, F.9, H.13, G.15, H.16, V.19, P.116, E.117, M.118, F.119, R.121, Y.124, S.125, G.126, T.127, R.130 Ligands: MG.6 20 PLIP interactions: 20 interactions with chain E Hydrogen bonds: E:I.6, E:R.8, E:F.9, E:F.119, E:F.119, E:R.121, E:G.126, E:T.127, E:T.127, E:T.127 Water bridges: E:R.121, E:R.121, E:R.121, E:T.127 Salt bridges: E:R.8, E:H.13, E:H.16, E:H.16, E:R.121, E:R.130 ATP.12: 20 residues within 4Å: Chain F: I.5, I.6, G.7, R.8, F.9, H.13, G.15, H.16, V.19, P.116, E.117, M.118, F.119, R.121, Y.124, S.125, G.126, T.127, R.130 Ligands: MG.5 26 PLIP interactions: 26 interactions with chain F Hydrogen bonds: F:I.6, F:R.8, F:F.9, F:F.119, F:R.121, F:Y.124, F:G.126, F:T.127, F:T.127 Water bridges: F:R.8, F:R.8, F:R.8, F:Q.10, F:Q.10, F:Q.10, F:R.121, F:R.121, F:R.121, F:R.130 Salt bridges: F:R.8, F:R.8, F:H.13, F:H.16, F:H.16, F:R.121, F:R.130

Links

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Citation

D'Angelo, I. et al., Structure of nicotinamide mononucleotide adenylyltransferase: a key enzyme in NAD(+) biosynthesis. Structure Fold.Des. (2000)

Release Date

2001-01-10

Peptides

HYPOTHETICAL PROTEIN MJ0541: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

HYPOTHETICAL PROTEIN MJ0541