SMTL ID : 1fat.1

PHYTOHEMAGGLUTININ-L

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-tetramer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 7 residues within 4Å: Chain A: R.10, F.11, N.12, E.13, V.24, S.25 Chain B: W.202 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.24 Hydrogen bonds: A:R.10, A:R.10, A:N.12, A:E.13 NAG.4: 6 residues within 4Å: Chain A: W.202 Chain B: R.10, N.12, E.13, V.24, S.25 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:V.24 Hydrogen bonds: B:R.10, B:N.12, B:E.13 NAG.7: 7 residues within 4Å: Chain C: R.10, N.12, E.13, V.24, S.25 Chain D: E.201, W.202 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:V.24 Hydrogen bonds: C:R.10, C:R.10, C:N.12, C:E.13, D:E.201 NAG.10: 7 residues within 4Å: Chain C: E.201, W.202 Chain D: R.10, N.12, E.13, V.24, S.25 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:V.24 Hydrogen bonds: D:R.10, D:N.12, D:E.13, C:E.201

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 5 residues within 4Å: Chain A: E.122, D.124, D.132, H.137, S.147 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.122, A:D.124, A:D.132, A:H.137, H2O.1, H2O.1 MN.5: 5 residues within 4Å: Chain B: E.122, D.124, D.132, H.137, S.147 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.122, B:D.124, B:D.132, B:H.137, H2O.1 MN.8: 5 residues within 4Å: Chain C: E.122, D.124, D.132, H.137, S.147 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.122, C:D.124, C:D.132, C:H.137, H2O.1 MN.11: 5 residues within 4Å: Chain D: E.122, D.124, D.132, H.137, S.147 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.122, D:D.124, D:D.132, D:H.137, H2O.1

4 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: D.124, L.126, N.128, D.132 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.124, A:L.126, A:D.132, H2O.1, H2O.1 CA.6: 4 residues within 4Å: Chain B: D.124, L.126, N.128, D.132 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.124, B:L.126, B:D.132, H2O.1, H2O.1 CA.9: 5 residues within 4Å: Chain C: D.86, D.124, L.126, N.128, D.132 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.124, C:L.126, C:D.132, H2O.1, H2O.1 CA.12: 4 residues within 4Å: Chain D: D.124, L.126, N.128, D.132 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:D.124, D:L.126, D:D.132, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hamelryck, T.W. et al., The crystallographic structure of phytohemagglutinin-L. J.Biol.Chem. (1996)

Release Date

1996-12-23

Peptides

PHYTOHEMAGGLUTININ-L: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

PHYTOHEMAGGLUTININ-L