SMTL ID : 1faw.1

GRAYLAG GOOSE HEMOGLOBIN (OXY FORM)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.09 Å

Oligo State

hetero-2-2-mer

Ligands

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 17 residues within 4Å: Chain A: Y.42, F.43, H.45, F.46, H.58, K.61, L.83, L.86, H.87, L.91, V.93, N.97, F.98, L.101, V.132, L.136 Ligands: OXY.2 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:Y.42, A:F.43, A:F.43, A:L.83, A:L.91, A:L.91, A:V.93, A:F.98, A:L.101, A:V.132, A:L.136 Salt bridges: A:H.45, A:K.61 pi-Stacking: A:H.58, A:H.58, A:H.87 Metal complexes: A:H.87 HEM.3: 16 residues within 4Å: Chain B: T.38, F.41, F.42, S.44, H.63, K.66, S.70, F.85, L.88, H.92, V.98, N.102, F.103, L.106, L.141 Ligands: OXY.4 16 PLIP interactions: 16 interactions with chain B, Hydrophobic interactions: B:T.38, B:F.42, B:F.42, B:F.85, B:L.88, B:L.88, B:V.98, B:N.102, B:F.103, B:L.106, B:L.141 Hydrogen bonds: B:S.44 Salt bridges: B:K.66 pi-Stacking: B:H.63 pi-Cation interactions: B:H.92 Metal complexes: B:H.92 HEM.5: 17 residues within 4Å: Chain C: Y.42, F.43, H.45, F.46, H.58, K.61, L.83, L.86, H.87, L.91, V.93, N.97, F.98, L.101, V.132, L.136 Ligands: OXY.6 17 PLIP interactions: 17 interactions with chain C, Hydrophobic interactions: C:Y.42, C:F.43, C:F.43, C:L.83, C:L.91, C:L.91, C:V.93, C:F.98, C:L.101, C:V.132, C:L.136 Salt bridges: C:H.45, C:K.61 pi-Stacking: C:H.58, C:H.58, C:H.87 Metal complexes: C:H.87 HEM.7: 16 residues within 4Å: Chain D: T.38, F.41, F.42, S.44, H.63, K.66, S.70, F.85, L.88, H.92, V.98, N.102, F.103, L.106, L.141 Ligands: OXY.8 16 PLIP interactions: 16 interactions with chain D, Hydrophobic interactions: D:T.38, D:F.42, D:F.42, D:F.85, D:L.88, D:L.88, D:V.98, D:N.102, D:F.103, D:L.106, D:L.141 Hydrogen bonds: D:S.44 Salt bridges: D:K.66 pi-Stacking: D:H.63 pi-Cation interactions: D:H.92 Metal complexes: D:H.92

4 x OXY: OXYGEN MOLECULE(Non-covalent)

OXY.2: 4 residues within 4Å: Chain A: H.58, V.62, H.87 Ligands: HEM.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.58 OXY.4: 5 residues within 4Å: Chain B: F.42, H.63, V.67, H.92 Ligands: HEM.3 No protein-ligand interaction detected (PLIP) OXY.6: 4 residues within 4Å: Chain C: H.58, V.62, H.87 Ligands: HEM.5 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:H.58 OXY.8: 5 residues within 4Å: Chain D: F.42, H.63, V.67, H.92 Ligands: HEM.7 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liang, Y.H. et al., The structure of greylag goose oxy haemoglobin: the roles of four mutations compared with bar-headed goose haemoglobin. Acta Crystallogr.,Sect.D (2001)

Release Date

2001-12-05

Peptides

HEMOGLOBIN (ALPHA SUBUNIT): AC
HEMOGLOBIN (BETA SUBUNIT): BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

HEMOGLOBIN (ALPHA SUBUNIT)

HEMOGLOBIN (BETA SUBUNIT)