SMTL ID : 1fbm.1

ASSEMBLY DOMAIN OF CARTILAGE OLIGOMERIC MATRIX PROTEIN IN COMPLEX WITH ALL-TRANS RETINOL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-pentamer

Ligands

1 x RTL: RETINOL(Non-covalent)

RTL.1: 19 residues within 4Å: Chain A: T.14, L.18, L.25, Q.28 Chain B: T.14, L.18, V.21, L.25 Chain C: L.18, V.21 Chain D: T.14, L.18, V.21, L.25 Chain E: T.14, L.18, V.21, L.25, Q.28 15 PLIP interactions: 4 interactions with chain E, 2 interactions with chain D, 4 interactions with chain A, 3 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: E:T.14, E:L.18, E:L.25, D:L.18, D:L.18, A:T.14, A:L.18, A:L.25, B:T.14, B:V.21, B:L.25, C:L.18, C:V.21 Hydrogen bonds: E:Q.28, A:Q.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, Y. et al., All-trans retinol, vitamin D and other hydrophobic compounds bind in the axial pore of the five-stranded coiled-coil domain of cartilage oligomeric matrix protein. EMBO J. (1998)

Release Date

2000-08-02

Peptides

PROTEIN (CARTILAGE OLIGOMERIC MATRIX PROTEIN): ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

PROTEIN (CARTILAGE OLIGOMERIC MATRIX PROTEIN)

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