SMTL ID : 1fbp.1

CRYSTAL STRUCTURE OF FRUCTOSE-1,6-BISPHOSPHATASE COMPLEXED WITH FRUCTOSE 6-PHOSPHATE, AMP, AND MAGNESIUM

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

4 x F6P: 6-O-phosphono-beta-D-fructofuranose(Non-covalent)

F6P.1: 14 residues within 4Å: Chain A: D.121, N.212, Y.215, Y.244, G.246, S.247, M.248, D.251, F.262, Y.264, K.269, K.274, L.275 Chain B: R.243 12 PLIP interactions: 11 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.121, A:N.212, A:Y.215, A:Y.244, A:Y.244, A:M.248, A:D.251, A:Y.264, A:K.274 Salt bridges: A:K.269, A:K.274, B:R.243 F6P.4: 14 residues within 4Å: Chain A: R.243 Chain B: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, F.262, Y.264, K.274, L.275 Ligands: MG.5 10 PLIP interactions: 9 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.121, B:N.212, B:Y.215, B:Y.244, B:Y.244, B:M.248, B:Y.264, B:K.274 Salt bridges: B:K.274, A:R.243 F6P.7: 14 residues within 4Å: Chain C: D.121, N.212, Y.215, Y.244, G.246, S.247, M.248, D.251, F.262, Y.264, K.269, K.274, L.275 Chain D: R.243 12 PLIP interactions: 11 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:D.121, C:N.212, C:Y.215, C:Y.244, C:Y.244, C:M.248, C:D.251, C:Y.264, C:K.274 Salt bridges: C:K.269, C:K.274, D:R.243 F6P.10: 14 residues within 4Å: Chain C: R.243 Chain D: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, F.262, Y.264, K.274, L.275 Ligands: MG.11 10 PLIP interactions: 9 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:D.121, D:N.212, D:Y.215, D:Y.244, D:Y.244, D:M.248, D:Y.264, D:K.274 Salt bridges: D:K.274, C:R.243

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: E.97, D.118, D.121, G.122, E.280 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.118, A:D.121 MG.5: 7 residues within 4Å: Chain B: E.97, D.118, D.121, G.122, R.276, E.280 Ligands: F6P.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.97, B:D.118, B:D.121, B:E.280 MG.8: 5 residues within 4Å: Chain C: E.97, D.118, D.121, G.122, E.280 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.118, C:D.121 MG.11: 7 residues within 4Å: Chain D: E.97, D.118, D.121, G.122, R.276, E.280 Ligands: F6P.10 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.97, D:D.118, D:D.121, D:E.280

4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.3: 14 residues within 4Å: Chain A: V.17, Q.20, G.21, A.24, G.26, T.27, G.28, E.29, M.30, T.31, K.112, Y.113, R.140, M.177 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:V.17, A:T.27, A:G.28, A:E.29, A:M.30, A:T.31, A:R.140, A:R.140 Salt bridges: A:K.112 AMP.6: 14 residues within 4Å: Chain B: V.17, Q.20, G.21, A.24, G.26, T.27, G.28, E.29, M.30, T.31, K.112, Y.113, R.140, M.177 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:V.17, B:T.27, B:T.27, B:E.29, B:M.30, B:T.31, B:Y.113, B:R.140, B:R.140 Salt bridges: B:K.112 AMP.9: 14 residues within 4Å: Chain C: V.17, Q.20, G.21, A.24, G.26, T.27, G.28, E.29, M.30, T.31, K.112, Y.113, R.140, M.177 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:V.17, C:T.27, C:G.28, C:E.29, C:M.30, C:T.31, C:R.140, C:R.140 Salt bridges: C:K.112 AMP.12: 14 residues within 4Å: Chain D: V.17, Q.20, G.21, A.24, G.26, T.27, G.28, E.29, M.30, T.31, K.112, Y.113, R.140, M.177 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:V.17, D:T.27, D:T.27, D:E.29, D:M.30, D:T.31, D:Y.113, D:R.140, D:R.140 Salt bridges: D:K.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ke, H.M. et al., Crystal structure of fructose-1,6-bisphosphatase complexed with fructose 6-phosphate, AMP, and magnesium. Proc.Natl.Acad.Sci.USA (1990)

Release Date

1992-04-15

Peptides

FRUCTOSE 1,6-BISPHOSPHATASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

FRUCTOSE 1,6-BISPHOSPHATASE

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