SMTL ID : 1fby.1

CRYSTAL STRUCTURE OF THE HUMAN RXR ALPHA LIGAND BINDING DOMAIN BOUND TO 9-CIS RETINOIC ACID

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

2 x 9CR: (9cis)-retinoic acid(Non-covalent)

9CR.1: 13 residues within 4Å: Chain A: I.45, C.46, A.48, A.49, Q.52, F.90, R.93, L.103, A.104, V.119, I.122, C.209, H.212 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.45, A:A.48, A:A.49, A:F.90, A:F.90, A:F.90, A:L.103, A:V.119, A:I.122, A:H.212 Hydrogen bonds: A:A.104 Water bridges: A:F.90 Salt bridges: A:R.93 9CR.2: 13 residues within 4Å: Chain B: I.45, C.46, A.48, A.49, Q.52, F.90, R.93, L.103, A.104, V.119, I.122, C.209, H.212 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:I.45, B:A.48, B:A.49, B:F.90, B:F.90, B:F.90, B:L.103, B:V.119, B:I.122, B:H.212 Hydrogen bonds: B:A.104 Salt bridges: B:R.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Egea, P.F. et al., Crystal structure of the human RXRalpha ligand-binding domain bound to its natural ligand: 9-cis retinoic acid. EMBO J. (2000)

Release Date

2000-07-28

Peptides

RETINOIC ACID RECEPTOR RXR-ALPHA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

RETINOIC ACID RECEPTOR RXR-ALPHA