SMTL ID : 1fc0.1

HUMAN LIVER GLYCOGEN PHOSPHORYLASE COMPLEXED WITH N-ACETYL-BETA-D-GLUCOPYRANOSYLAMINE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x NBG: N-acetyl-beta-D-glucopyranosylamine(Non-covalent)

NBG.1: 14 residues within 4Å: Chain A: G.135, L.136, L.139, N.284, D.339, H.377, T.378, V.455, N.484, Y.573, E.672, A.673, S.674, G.675 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:T.378 Hydrogen bonds: A:N.284, A:N.284, A:H.377, A:N.484, A:E.672, A:S.674, A:S.674, A:G.675 Water bridges: A:L.136, A:Y.573, A:A.673, A:T.676 NBG.3: 15 residues within 4Å: Chain B: G.135, L.136, L.139, N.284, D.339, H.377, T.378, V.455, N.484, Y.573, E.672, A.673, S.674, G.675, T.676 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:L.136, B:H.377, B:T.378 Hydrogen bonds: B:N.284, B:N.284, B:H.377, B:H.377, B:N.484, B:N.484, B:E.672, B:E.672, B:S.674, B:S.674, B:G.675 Water bridges: B:L.136, B:N.284, B:A.673, B:T.676

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.2: 16 residues within 4Å: Chain A: Y.90, G.134, G.135, R.138, W.491, V.567, K.568, K.574, Y.648, R.649, V.650, A.653, G.675, T.676, G.677, K.680 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.90, A:R.138, A:Y.648, A:V.650, A:K.680 Hydrogen bonds: A:V.567, A:T.676, A:T.676, A:G.677 Water bridges: A:G.135, A:K.568, A:Y.648 Salt bridges: A:K.568, A:K.574 PLP.4: 14 residues within 4Å: Chain B: G.134, G.135, W.491, V.567, K.568, K.574, Y.648, R.649, V.650, A.653, G.675, T.676, G.677, K.680 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:Y.648, B:V.650, B:K.680 Hydrogen bonds: B:V.567, B:T.676, B:T.676, B:G.677 Water bridges: B:G.135, B:K.568, B:R.569, B:Q.665, B:N.678 Salt bridges: B:K.568, B:K.574

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rath, V.L. et al., Activation of human liver glycogen phosphorylase by alteration of the secondary structure and packing of the catalytic core. Mol.Cell (2000)

Release Date

2000-08-25

Peptides

GLYCOGEN PHOSPHORYLASE, LIVER FORM: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GLYCOGEN PHOSPHORYLASE, LIVER FORM

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